KEGG   Nymphaea colorata (blue-petal water lily): 116266281
Entry
116266281         CDS       T07418                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ncol  Nymphaea colorata (blue-petal water lily)
Pathway
ncol03030  DNA replication
ncol03410  Base excision repair
ncol03420  Nucleotide excision repair
ncol03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ncol00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    116266281
   03410 Base excision repair
    116266281
   03420 Nucleotide excision repair
    116266281
   03430 Mismatch repair
    116266281
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ncol03032]
    116266281
   03400 DNA repair and recombination proteins [BR:ncol03400]
    116266281
Enzymes [BR:ncol01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     116266281
    6.5.1.6  DNA ligase (ATP or NAD+)
     116266281
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     116266281
DNA replication proteins [BR:ncol03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    116266281
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     116266281
DNA repair and recombination proteins [BR:ncol03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     116266281
   NER (nucleotide excision repair)
    Other NER factors
     116266281
   MMR (mismatch excision repair)
    Other MMR factors
     116266281
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase HVO_A0114 HTH_36
Other DBs
NCBI-GeneID: 116266281
NCBI-ProteinID: XP_031503289
LinkDB
Position
12:18003173..18017907
AA seq 764 aa
MFLSLTFSLSLMLRHLSLSPFLCSASIKSSFASFSRFPSSCPNPNPGPYFHPFSKMSTRT
VADVLMAAARANAAKKGEPPSKRAKIVEETPKKDADISDEPAKPTGSSGGGGKGGSSEGF
DLDAKIRQLTKKPPEFKPKSAAFWKEGEHVPFLFLARALDLIANESGRIAMTDIMCNVFR
TVIATTPDDLLAVVYLSANKIAPAYKGIELGIGDAAIIKVLAEACGRNETHIKTQLKTLG
DLGLVAKASRRTQALMKKPEPLTVINVLKAFRDIAEESGKESQDKKRIRIRNLLVAATDC
EPQYLVRLLQSKMRIGLAEQTVLVALGQAAVYSEIPPVPSSQIQSRLEEAAKSVKQVYSV
LPIYDRIVSTLLSVGVSKLLDACTFSLGVPVGPMLAKPTKGVSEILDKFQDTEFTCEYKY
DGERAQIHYMDDGKVEIYSRNAERNTEKFPDVVSSVARFKKHSVQSFVLDCEVVAYDREK
KKILPFQVLTTRARKGVILSDIKVQVCIFAFDILYLNGRPLLQEQLRTRRELLYDSFNEV
EGVFQFATAITSSDLEEIQKFLGSAVNNSCEGLIIKTLDKDATYEPSKRSMNWLKLKKDY
MDSIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDEVKEEYQSICKIGTGFSEAMLEERS
ASLRDKVIAKPKPYYRYGDTMNPDVWFEPSEVWEVKAADLSISPVHCAAIGEVDPKKGIS
LRFPRLLKIREDKNPDQATTSEQVADMYRNQKINHSRNQDEEED
NT seq 2295 nt   +upstreamnt  +downstreamnt
atgttcctctctttgacgttctccctgtcgttgatgttgaggcatttgtccctctccccc
ttcctctgcagtgcttccattaaatcttccttcgcaagcttctccaggttcccttcttca
tgcccaaaccctaaccccgggccttacttccatcccttctcaaagatgtccacccgcaca
gtcgccgacgttctcatggccgccgcccgcgccaacgccgccaagaagggagagcctcct
tcgaagcgcgccaaaatcgtcgaggaaacccccaagaaggacgccgatatctccgatgag
cccgcgaagccgaccggcagcagcggcggcggtggtaagggtggcagcagtgagggattt
gatctggacgcgaagatccgtcagttgacgaagaagccgccggagttcaagccgaaatcc
gctgcgttctggaaggaaggggagcacgtgccgttcctcttcctcgctcgcgcgcttgac
ctgattgcgaatgaatcgggaaggatcgcaatgacggatatcatgtgtaatgtgtttcgg
acagtgatcgccactacgccggacgatttgcttgccgtggtgtatctttccgcgaacaag
attgcccctgcttacaaaggcattgaactcgggattggagatgcggccattatcaaggtt
cttgctgaagcctgtgggaggaatgagacgcatattaaaacacaactgaagacattgggt
gacctaggacttgttgcaaaagcaagccgtcggacacaagcgctgatgaaaaagccggag
ccactcacggttatcaatgttttgaaggcttttcgtgacattgcagaggaatctggaaag
gaaagccaagacaaaaagcgaatacggataaggaacctcctggtggctgcaacggattgt
gaaccacagtatcttgtccgtctattgcagtcaaagatgcggattggtttagctgagcaa
actgttttggttgccttggggcaagcagctgtatattctgaaattcctcctgtcccatca
tcacaaattcaatctcggttggaagaggctgctaaaagtgtcaaacaagtgtattcggta
ctccctatatacgacagaattgtctccacccttctgagtgttggagtgagtaagcttttg
gatgcatgtaccttttccttgggtgtgcctgttgggcctatgttagctaagcctaccaag
ggtgtatcagaaattttagataagtttcaggatactgagtttacttgtgaatacaagtat
gatggtgaacgggctcagatacattatatggatgatggaaaagttgagatctacagtcgt
aatgctgaaagaaacactgaaaagtttcctgacgttgtttcttcagttgcaagattcaag
aagcactcagtacaatcctttgtcctggactgtgaagttgttgcttatgatcgtgaaaag
aaaaagattttgcccttccaggtcctgacaacccgtgccagaaagggtgtcatactgagt
gatatcaaagttcaagtttgcatttttgcttttgatattttgtacctcaatggccgcccc
cttcttcaggagcaacttagaacacgtcgagagcttctgtatgattcttttaatgaagta
gaaggggtctttcagtttgcaactgcaattacatcgagtgatcttgaggaaatacagaaa
tttcttggaagtgcagttaataatagttgtgaagggttaattattaaaacactggacaag
gatgctacttatgaaccttccaaacggtccatgaactggttgaaattgaagaaggattac
atggacagtattggggactcattggatcttgtacctattgctgcatttcatggccgtgga
aagcgtacaggagtttatggtgcatttttacttgcatgttatgacgaagtaaaggaagaa
taccagagcatctgcaagataggaactggtttttctgaagcaatgcttgaagagcgttca
gctagtttacgtgataaagttattgccaagccaaagccttattataggtacggagatacg
atgaatccggatgtttggtttgaaccatctgaggtttgggaggtgaaagctgcagattta
agcattagtcctgtacattgtgctgctattggtgaagtagatcctaagaagggtatctct
cttcgatttccacgattgctgaaaattcgtgaagataagaacccagatcaagccacaaca
tctgagcaggttgctgacatgtaccgcaatcaaaagattaaccattcaaggaaccaggac
gaggaggaagactga

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