Nymphaea colorata (blue-petal water lily): 116267298
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Entry
116267298 CDS
T07418
Name
(RefSeq) serine/arginine-rich splicing factor SR45 isoform X1
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03013
Nucleocytoplasmic transport
ncol03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116267298
03015 mRNA surveillance pathway
116267298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116267298
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116267298
BRITE hierarchy
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GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_10
Nup35_RRM_2
RRM_3
HU-CCDC81_euk_1
Motif
Other DBs
NCBI-GeneID:
116267298
NCBI-ProteinID:
XP_031504829
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Position
13:12491623..12504056
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AA seq
419 aa
AA seq
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MAKPGRARPSTPSNSNSGSSSFSGSSSGSRSRSRSRSRSRSKSFSSSSPSPSDSSRSRSP
VPPKRSSPVGAGRRGRSPPPPPKRASPARKVSPVLESVVLHIDQLTRNVNEAHLKEIFSN
FGEVVNVELAMDRSVQLPRGYGYVEFKARPDAEKALLYMDGGQIDGNIVRVRFTLPQRQK
VSSPPKVAPPPPKREPPPKDANAADIERDAPQRPRDSSPRRRPLSPPRKKSPLRRGDSPP
RRRPDSPPRRRADSPPRRRMESPPYRRGESPPLRRRLASPARRRSPSPAHRRQRSPPPRV
SPRRARGSPVARRRSPLPPRRRSPPRRARSPPRRSPVGRRRSRSPIRRPARSRSRSSSLP
RRGRPGPPRRARSTSSSSRSPSPRKGSRRISRSRSPKRSARGKSSSNSSSSGSPSPKPN
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaacccggcagggctcgcccgtcgactccgtccaactccaactccggctcctct
tccttctccggttcctcctccggctctcggtcgcgctctcgctcccggtcgcggtcccgc
tcgaagtcgttctcatcgtcctcgccttcacccagcgacagctcgaggagccgcagcccc
gtcccgccgaagaggagcagtccagttggagcaggcaggcgaggacgctctccacctccc
ccacccaaacgagcatcacctgctcgtaaggtgtctccggttcttgagtcagtggttctg
catatcgatcaactgacaagaaatgtgaatgaagctcatctgaaggaaatctttagtaac
tttggggaggttgtcaatgtggaattggcaatggatcgtagtgttcagttgccacggggc
tatggttatgttgaatttaaagcaagacctgatgctgagaaagccctcctgtacatggat
ggaggccaaattgatggtaacattgtccgtgtacgctttacactgcctcaacgccaaaaa
gtttcttctccaccaaaagttgcacccccacctcctaagagggagcctccaccgaaggat
gcaaatgctgcagatattgaaagagatgcaccacagaggccaagggattcatcccctcga
agaagaccactatctccaccacgtaaaaagtctccacttcgaagaggtgattccccacca
agacggcgccctgattctccaccacgacgccgggctgattctcctccacggcgccgaatg
gagtctccaccttatcgacgtggtgaatcaccaccactcagaaggagacttgcttcaccg
gcaagaaggcgttctccttctcccgctcatagaaggcagcgatctcccccaccaagggtg
tctccaagaagggcacgtggtagcccagttgcccgtagacgttctccattgccaccgagg
cgccgttcaccccctaggcgagctcgaagtcctccaaggagatcacctgttggtcgtcgc
cgcagccgctctcctattcgcaggcctgcacgttcccgctcgagatcatcttcccttccg
cgcagaggcaggccaggacctcctagacgtgcaaggtccacctcatcctcttctagatct
ccaagcccacgcaagggaagcagaaggatatcaagaagtcgaagccctaaaagatcggcc
agaggcaagagcagtagcaacagcagcagcagtggctccccgtcccctaagcccaattag
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