Nymphaea colorata (blue-petal water lily): 116267791
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Entry
116267791 CDS
T07418
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116267791
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116267791
03012 Translation factors [BR:
ncol03012
]
116267791
Enzymes [BR:
ncol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116267791
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116267791
Translation factors [BR:
ncol03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
116267791
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
R3H
HA2_C
DEAD
HA2_N
Ank_5
AAA_22
Ank_2
AAA_19
nSTAND3
ATPase
Ank
Rad17
ResIII
HpaB
AAA_7
AAA_16
Ank_4
Sigma54_activat
PhoH
Motif
Other DBs
NCBI-GeneID:
116267791
NCBI-ProteinID:
XP_031505554
LinkDB
All DBs
Position
14:complement(9940689..9997929)
Genome browser
AA seq
1239 aa
AA seq
DB search
MGKKGQKQGKGNGGQARKPHVAEATKIQIAKLLEEFRLSNSEVYTFEADLTNTERAEVHM
LCRKMGMVSKSSGRGQHRRVSVFKALQKKAEKNDTGSIALTFSDDTQSVLRDLFAHYPPG
DDESFEEIKSFCSKNERRQRNYDTSFCKPIMSKRDIKRKLDLFASRIKESPQLRKISEDR
SKLPIASFIDAITDSVESHQVVLISGETGCGKTTQVPQYLLDHMWRKSQNCKIVCTQPRR
ISAISVAERIAWERGEGVGESVGYKIRLESEGGKHSSIMFCTNGILLRLLIGMGAGTSKK
EAKLDEAEAHEITHIIVDEIHERDRFADFMLAILRDQLPLWPHLHLVLMSATIDAERFSQ
YFGGCPIIRVPGFTYPVKTYHLEDVLSILRSPDAVHANADGLCNETSLNQLTEEYRIAMD
ESISLAWVNDEFEPLLELISTEVSPEIHNYQHSSTGATPLMVLAGKGRVGDVCMLLSFGA
DCFVCDNDGRAALDWAESGNHLEVVGVLKSHMEQHDLESEEEKQLLEKYLSTVNQDHVDI
VLIEKLLKKICIDSVEGAILVFFPGWEDISQSRERLLSSPFFRDSSKFQIIVLHSMIPSM
EQKKVFKHPPPGVRKIILSTNIAETAVTIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWI
SKASAKQREGRAGRCQPGICYHLYSKARAASLPHYDVPEIKRTPIEELCLQVKLLDPQFK
IVDFIQRTLDPPVFEAIHNAVVVLQEIGALTEDEHLTELGKKIGSLPVHPLTSKMLLFAI
LMNCLDPALTLACTSGYRDPFVLPILPDEKKRAKAAKLELASLYGGHSDQLALIAAFDCW
KGAKAKGQEQKFCSQYFISPSVMNMLFGLRKQLQIELIQNGFIPEDVSNCSLNSKDPGIL
RAIILAGMYPMVGRLLPRLKNGQKAVVETASGAKVRLHPHSSNFSLSSSKCLTCPLLAYD
EVTRGDGGIYIKNCTLVGPYPLLLLATEMVVAPANENEDEYDEESDTCMSDEDEKEPPTA
SVKQETLMSSPENSVSVVIDRWLRFEATALDVAQIYCLRERLFAAILFKVHRPQEILPPA
LGASVYAIACMLAYDGMSGIDAGLMSVDSLTTMVKTTGIESSSSKKHFISEGKKSIRSHC
PSNSLEYLKSLLNADTAVAVAACNSTQQLHKSKSTAKLYNGQRHNGSSHKHSKSAGPTNK
VPSERTERASAEPPFVGGSNPPRAGSFKRQRENGFQLFS
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atggggaagaaagggcagaagcaagggaaagggaatggagggcaagcaaggaagcctcat
gtcgccgaagccaccaagattcaaatagccaagctgctggaagagttccgccttagcaat
tctgaagtgtatacatttgaagcagatttgaccaacactgagcgtgctgaggtgcatatg
ctatgtagaaaaatgggcatggtgtcaaaaagttctgggcgtggacaacatcggcgagtt
tcggtattcaaagctctccaaaagaaagcagaaaagaatgacacgggtagtatcgcattg
actttttcagatgacacacaaagtgttttaagagatctgtttgcccattatcctcctggt
gatgatgagtcctttgaagaaataaagagcttttgcagcaagaatgaaaggagacagagg
aattatgacactagtttctgcaagcccataatgtccaagcgagacattaagaggaaattg
gatttatttgcatcaaggatcaaggaatctcctcagcttagaaagatttcagaagatagg
tcaaagttgccaattgcatcttttattgacgctataacagacagcgtggaatcccatcag
gtagtgctgatatctggtgaaactggttgcgggaagacaactcaggttccacagtacctt
ttggatcacatgtggaggaaaagtcagaattgcaaaatcgtgtgtacacagcctagacgt
atttctgccatatcagttgctgagagaattgcttgggaaagaggtgaaggtgttggtgaa
agtgttggctacaagattcgtctggagtccgaaggtgggaagcattcatcaataatgttt
tgcacaaatgggatccttttaaggctgttgattggcatgggtgctggtacatcaaagaaa
gaagcaaagcttgatgaagcggaggcccatgaaataactcatattattgtggatgaaatc
catgaaagagatcgttttgctgattttatgcttgcgattcttagagatcagctgcccttg
tggcctcatctacatctggtgttgatgagtgcaactattgatgctgaacggttttcacaa
tattttggtggatgccctattattcgagtcccagggttcacatatcctgtcaagacctac
cacttggaggatgtgctttctatcttgaggtcgccagatgctgttcatgccaatgctgat
ggcttgtgcaatgaaacaagtttaaaccaattaacagaagagtacagaattgccatggat
gaatcaattagcttggcgtgggtcaatgatgaatttgaacctctgctcgaattaatttcc
actgaagtttctccagaaattcataattaccagcattcctcaactggtgcaacaccttta
atggtccttgcaggaaaaggtcgagtaggtgatgtttgtatgctgctttcatttggtgct
gattgctttgtttgtgataatgatggaagggcggcactagattgggctgaaagtggaaat
catctagaagttgtgggggtgctgaagtctcatatggagcagcatgaccttgaatcagaa
gaggaaaaacagcttcttgagaaatatttgtcgactgttaaccaagatcatgttgacatt
gtcctcattgaaaaactgttgaaaaaaatatgtattgattctgtggagggagctatcctt
gttttctttcctgggtgggaggacataagtcaatccagagagagattactttcctctcct
ttcttccgtgactcctcaaagttccagataatagttcttcactcaatgataccatcaatg
gagcagaaaaaggttttcaaacacccacctcctggtgttcgaaaaatcatcctttccaca
aacattgctgaaactgctgtgaccattgatgatgttgtttatgtcatagacagtggtcgt
atgaaggaaaaaagttatgatccttacaacaatgtgtccactcttcagtcttcatggatt
tcaaaagccagtgcaaaacagcgggaaggacgtgctggacgatgtcaacctggaatatgc
taccacctctattcaaaagctcgtgcagcatctttgcctcactatgatgttcctgaaatc
aagaggacacctattgaggagctgtgcttgcaggtaaagttacttgatccacaattcaaa
attgtggactttatacagagaactttggatcctccagtatttgaggccatacacaatgcg
gttgtagttctccaagagattggggcattaacagaggatgaacatctgacagaactgggg
aaaaagataggttccttgccagtgcatccattgactagcaaaatgcttctatttgctatc
ttaatgaattgcttagatcctgcattaaccttagcatgtacgtcaggctatagggatcca
tttgttttaccaatacttcctgatgagaagaaaagagctaaagcagccaaattggagctt
gcttcactttatggtggccatagtgatcagcttgcgctaatagcagcatttgactgctgg
aaaggtgctaaagctaaaggtcaagaacagaaattctgttcccaatattttatttctcca
agtgtaatgaatatgctatttggcttgcgcaagcagttgcaaattgaactcattcagaat
ggatttataccagaagatgtctctaactgtagcctgaattctaaggatccaggaattctg
cgtgcaattattttagctggtatgtatcccatggtgggaagattactaccacgactcaaa
aatggtcagaaagctgttgtggagactgccagtggtgctaaagttcgtttgcatcctcat
tcttccaattttagcttgtcatctagcaaatgtctgacttgccccttgttagcatatgat
gaagtcactcgtggagatgggggcatttacataaaaaactgtactcttgttggaccttat
ccattgttactgcttgcaacggagatggttgttgctcctgcaaatgaaaacgaagatgaa
tatgatgaagaatctgatacatgtatgagtgatgaagatgaaaaggaacctccgaccgct
tctgtgaaacaagaaacacttatgtcttcacctgagaatagtgtttcagttgtcattgat
aggtggcttaggtttgaagcaactgcacttgatgttgctcagatttactgtttgagggaa
cgactttttgctgcaatattattcaaggtccatcgtcctcaagaaatattacctccagcc
ctgggggcatcagtttacgcaattgcttgcatgcttgcctatgatggtatgtctgggata
gatgctggattgatgtcagtagattctcttacaacaatggtcaaaaccactggcatagaa
agctcatcttcaaaaaagcatttcatatctgaaggaaagaagtcaattagaagtcattgt
ccatccaattcgcttgagtatctgaaatcactgttaaacgcagacactgctgttgcagtt
gctgcttgtaattctacacagcagctgcacaaatcaaagtccactgcaaaactctataat
ggacaaagacacaatggttcaagtcataagcactcaaaatcagccggtccaactaataaa
gtgccatctgagaggactgaaagagcatcagctgagcctccttttgttggtggaagtaac
ccgccaagagctggttctttcaagaggcaacgtgaaaatggttttcaattattcagctaa
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integrated database retrieval system
