Nymphaea colorata (blue-petal water lily): 116268294
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Entry
116268294 CDS
T07418
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ncol
Nymphaea colorata (blue-petal water lily)
Pathway
ncol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116268294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncol03019
]
116268294
03041 Spliceosome [BR:
ncol03041
]
116268294
03009 Ribosome biogenesis [BR:
ncol03009
]
116268294
03016 Transfer RNA biogenesis [BR:
ncol03016
]
116268294
Enzymes [BR:
ncol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116268294
Messenger RNA biogenesis [BR:
ncol03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
116268294
Spliceosome [BR:
ncol03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
116268294
Complex C
U4/U6.U5 tri-SnRNP related factors
116268294
Ribosome biogenesis [BR:
ncol03009
]
Eukaryotic type
Pre-60S particles
Helicases
116268294
Transfer RNA biogenesis [BR:
ncol03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
116268294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
nSTAND3
ATPase_2
HR1
AAA_22
Motif
Other DBs
NCBI-GeneID:
116268294
NCBI-ProteinID:
XP_031505867
LinkDB
All DBs
Position
Unknown
AA seq
536 aa
AA seq
DB search
MERGMELRAGRPNSKQNSDRQAMKDRLELKILQAQQKLEEIKSTLKKYQREKPYTGELKA
KKYPFKLDPFQQKAVTAIESDESVLVCAHTSAGKTAIAEYAIALSLKRNSRVIYTSPIKA
LSNQKYRELKEEFGDVGLVTGDVAIDQGATCLVMTTEILRNMIYRGSEIVRXVKWVIFDE
VHYMRDKERGVVWEETIIMLPANVRYVFLSATIGNPGEFAMWITKLRKQPCNVVYTDYRP
VPLEHYLCPSGGEGLYLVVDDKGKFHEDNFSKAIQSLGEGGTLIGLDKKKKNLSQGSDLS
KIIKTIMERQLDPVIVFSFSKKDVESYARSICTKYDLTTKAEKERIXLIYGRSLLVLEEK
DRQLPAIQAMRXIVKKGVGIHHGGLLPLVKEVVELLFQEGLLKVLFSTXTFSMGLNMPAR
TVVFTNIKKFDGEKSRWLTGGEYIQMSGRAGRRGLDKKGSTILMFDEKMEKDVAKAMLKG
HSDNLLSSFYINYHMLLNSQRLEDIDLEYILARSLLQFQQDAQLPALKQQLAXKQK
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atggagagggggatggaactgagggcgggcagaccgaacagcaagcagaatagcgataga
caggccatgaaggatcgtctcgagctcaagatcctgcaggcgcagcaaaagctggaggag
atcaagtccaccctgaagaaatatcaacgagagaagccctacaccggcgaactgaaggcc
aagaaataccccttcaagctcgaccccttccagcagaaggcagtcaccgccatcgagtcc
gacgagtcagtcctcgtctgcgcccacacctccgcaggaaaaacagccatcgcagagtac
gcgatcgctctgtctctcaagcgcaacagcagagtgatctacacatcgcctatcaaggcc
ctttccaatcagaagtatcgagagctcaaagaggagttcggagacgtgggactagtcact
ggagacgtggcgatagaccagggagccacttgcttggtgatgacgaccgagatcttacgg
aacatgatctacaggggtagtgagatcgtgcggtaagtgaagtgggtgatcttcgacgag
gtgcattacatgcgagacaaggagagaggagtggtgtgggaagaaaccatcatcatgctg
cccgcgaatgttcgatacgtattcctctctgccaccatcggcaatcctggagagttcgcc
atgtggatcaccaaactccgcaaacagccatgcaacgttgtctacaccgactatcggcct
gtccctctagagcattacctctgtccttctggaggagaggggctctatcttgtggtcgac
gataagggaaagttccacgaggacaacttcagcaaggcaattcagtcactcggagaagga
ggcacgcttattggtttggacaagaagaagaaaaacctgagtcagggttctgatctttct
aagatcattaagaccatcatggagcggcaactagacccagtcattgtgttcagtttcagc
aagaaagatgtggagtcttatgctcgatccatatgcaccaagtatgaccttaccaccaaa
gctgaaaaagaacgtatctagctcatatacggtcgttccctactggtcctagaagaaaag
gatcgccaactgccagctatacaagccatgcgatagatcgtaaagaaaggtgtgggcatc
catcacggtggattgctgcctttagtgaaggaagtggtggagctgctcttccaggaaggc
cttctcaaggtgctcttttcaacatagacattctcaatgggtctcaacatgcctgccagg
actgtcgtattcaccaacatcaagaagttcgatggtgagaaatcacgctggctgacagga
ggagagtatattcaaatgagtgggagagctggccgaagaggacttgacaagaaaggttcg
actattctgatgtttgatgaaaagatggagaaagatgtggcgaaagcgatgctcaagggc
cattctgataaccttctcagcagcttctacatcaactaccacatgctgctcaacagtcaa
agattggaagacattgaccttgaatacatcctggctcgctcattgctccagttccagcag
gatgcacaactgccagccctcaagcaacaactggcataaaagcagaaataa
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