Candidatus Nanohalobium constans: LC1Nh_0026
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Entry
LC1Nh_0026 CDS
T07315
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic 3'-phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
ncon
Candidatus Nanohalobium constans
Brite
KEGG Orthology (KO) [BR:
ncon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ncon03016
]
LC1Nh_0026 (thpR)
Enzymes [BR:
ncon01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
LC1Nh_0026 (thpR)
Transfer RNA biogenesis [BR:
ncon03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
LC1Nh_0026 (thpR)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
AKAP7_NLS
2_5_RNA_ligase2
Acb1
HVSL
DUF3091
Motif
Other DBs
NCBI-ProteinID:
QGA79935
UniProt:
A0A5Q0UG45
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All DBs
Position
21953..22486
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AA seq
177 aa
AA seq
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MRVFTAVNIENEKVLDKLEEMQKELDYGFNKVKPGKMHLTLQFFKNVDRNELEEIKTGLN
KIEMEPFKLKIKGVGVFPSKDYVRVVWAGIESEEVFELKNQVSKHSVEEDNDHKFHPHIT
LSRVKNIARRDKKDFRRKLEKLEDEEIAQTTVKSVKLFKSKHTGKAMVYSVLEEKEL
NT seq
534 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgtcttcaccgcagtcaacatagaaaacgaaaaagtactagacaaactggaggag
atgcagaaggaactggactacggcttcaacaaagtaaaaccagggaaaatgcatctaact
ctccaatttttcaaaaatgttgataggaatgaactagaagaaataaagacaggactgaac
aaaattgagatggagcctttcaaattgaagattaaaggcgtaggcgtatttccgtcaaaa
gactatgtacgagttgtctgggcagggattgagtctgaagaagtattcgaattaaagaac
caggtttcaaaacactcggttgaagaggacaacgatcacaagttccatcctcatatcacg
ttatccagagtaaaaaacatcgccagaagagacaaaaaagatttcagaagaaaacttgag
aaactggaggacgaggagatagctcagacgaccgtcaaatcagttaaactattcaaaagc
aaacataccggaaaagccatggtttacagtgtattggaggagaaggagctgtga
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