KEGG   Candidatus Nanohalobium constans: LC1Nh_0852
Entry
LC1Nh_0852        CDS       T07315                                 
Symbol
lig1
Name
(GenBank) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ncon  Candidatus Nanohalobium constans
Pathway
ncon03030  DNA replication
ncon03410  Base excision repair
ncon03420  Nucleotide excision repair
ncon03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ncon00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LC1Nh_0852 (lig1)
   03410 Base excision repair
    LC1Nh_0852 (lig1)
   03420 Nucleotide excision repair
    LC1Nh_0852 (lig1)
   03430 Mismatch repair
    LC1Nh_0852 (lig1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ncon03032]
    LC1Nh_0852 (lig1)
   03400 DNA repair and recombination proteins [BR:ncon03400]
    LC1Nh_0852 (lig1)
Enzymes [BR:ncon01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LC1Nh_0852 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     LC1Nh_0852 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     LC1Nh_0852 (lig1)
DNA replication proteins [BR:ncon03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    LC1Nh_0852 (lig1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     LC1Nh_0852 (lig1)
DNA repair and recombination proteins [BR:ncon03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     LC1Nh_0852 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     LC1Nh_0852 (lig1)
   MMR (mismatch excision repair)
    Other MMR factors
     LC1Nh_0852 (lig1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-ProteinID: QGA80736
UniProt: A0A5Q0UGN3
LinkDB
Position
699565..701238
AA seq 557 aa
MKYSELAEKYQELESTQKTLEKTDILAELFKEGGEDLEYLVLLARGRIYPEWNEVEIGLS
SSMMQDIIAEATGYTEKEVEELWRDEGDLGLAAEELAKNKKQQKLMSTTLTVEKVIQRLR
KVAEMSKEGSSQSVSQDKKKKEIADLISSSEPLEARYITRTVLSHLRIGIGEGTIRDALA
EAFFEGENKDKIQRAYDFTNDFTEVAQACTKGIEEVEELKLELFRPVNSMLAKKVDTIEE
GFDSVGKPAVIDYKYDGMRAQIHIKDREVKIFTRRLEDVTEQFPDVVEKVEEHIDAENCI
LDTEIVGFNPEDGSMIEFQKLSKRIKRKYDIQKQVNEIPVEVRPFDLIYLNEPILEEEYS
ERLEKLDRIVDEEERELRLVDREVTDEEEKVQEMQQKSLSEGHEGIMMKKLDAEYKPGNR
VGYMVKLKPVMETLDLAIVAAKWSEGERAGWLGRLFLGCYNKETGEYEQVGKMATGLTEE
QLEEITERLKPLIEKEDGRKVWVQPDIIVEVEYEEIQQSPTYNSGYALRFPRLKSFRDDK
EEADSKEKIESLYEDQK
NT seq 1674 nt   +upstreamnt  +downstreamnt
gtgaagtactcggagctagctgaaaaataccaggaactggaatccactcagaagacactc
gagaaaacagatattctagcagaactattcaaggaaggaggcgaagatctagaatacctg
gtactcctggcaagaggacgaatctacccagaatggaacgaagtggagataggactctcc
agcagcatgatgcaggacatcatagcagaagcaacaggatacacagagaaagaagtcgaa
gaactctggagagacgaaggagacctcggactagcagcagaagaactagccaaaaacaaa
aaacagcagaaactcatgagcacaacactgacagtggagaaagtgattcaaagactgcgg
aaagtcgcagagatgagtaaagaagggtccagccaatccgtaagccaagacaagaagaaa
aaagaaattgcagatttaatcagctcatcagaaccgcttgaagcacgatacataacaaga
accgtactaagccacctaagaatagggattggagaaggaacaatcagagatgcactggca
gaggcattcttcgagggagaaaacaaggataagattcagagagcatacgacttcaccaat
gatttcacagaagtggcccaggcatgtacaaaaggaatagaagaggtggaagaactgaag
ttagagcttttcagacctgtcaactcgatgctagccaagaaagtagatacaatagaagaa
ggattcgattcagtaggtaaaccagccgttatcgattataaatatgatgggatgagggct
cagatccatatcaaggatagagaagtcaaaatatttactcgaagacttgaagatgtcact
gaacagttcccagatgtagtagaaaaagttgaggaacatatagatgctgaaaactgtatt
ctagacacggagatagtcggttttaatcccgaagatggatctatgatagagttccagaag
ctgtccaagaggattaagagaaagtatgatattcagaagcaggtgaacgagatccctgta
gaggtcagacctttcgacctgatataccttaacgagccgatccttgaggaagagtacagc
gagaggcttgagaaactggacagaatagtcgatgaagaggagcgagaactcagactagtc
gacagagaagtcaccgatgaagaggagaaggttcaggaaatgcagcaaaaatctctgtcc
gaaggacatgaaggcattatgatgaagaagctggatgcagaatacaagcccggaaaccgg
gtcggatacatggtcaagctgaagccagtaatggagacactggacctggcgatcgtggca
gccaaatggagtgaaggtgagagagccggatggctaggcagactattcctcggatgctac
aacaaggaaacaggagaatacgaacaggtcggaaaaatggccacaggactgacagaagaa
cagctagaagagataacagagaggctgaagccgttaatagaaaaggaagatggtcgaaaa
gtctgggtccaaccagacataatagtagaagtagaatacgaagaaatacagcaaagccca
acctacaactcaggatacgcactgcgcttcccaagactaaagagtttcagagacgataaa
gaagaagcagactccaaggagaaaattgaaagtttgtatgaggatcagaagtaa

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