Novosphingobium capsulatum: U0041_01375
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Entry
U0041_01375 CDS
T10206
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ncp Novosphingobium capsulatum
Pathway
ncp03020
RNA polymerase
Brite
Enzymes [BR:
ncp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
U0041_01375 (rpoC)
Transcription machinery [BR:
ncp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
U0041_01375 (rpoC)
DNA repair and recombination proteins [BR:
ncp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
U0041_01375 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WQD93281
LinkDB
All DBs
Position
complement(313233..317513)
Genome browser
AA seq
1426 aa
AA seq
DB search
MNDLTKFTNQLPKPETFDQIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERILYFESYVVIEPGITPLERYQLLTEDELLDAQDEYGEDAFSAG
IGAEAVKHMLMDLDMVQEREDLLKELSETKSELKPKKIIKRLKVVESFIDSGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMDRKGEPGEGMLLADMAEVHQALFA
GAVTMHTKIVARVPQTDENGKSYLKRYETTPGRMLIGECLPKSHTVPFELVNRLLTKKEI
ADVIDQVYRHTGQKETVLFADAIMSLGFRNAFKAGISFGKDDMIIPATKDAFVAETKELV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVANAMMDEIRATPSDEHGREKPINSIYMM
SHSGARGSPTQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCVVTVNDCGTERALEMRAIVQGGATIASLGERILGRTLA
EDMIEAKTGNVICEKGTLLDEAAIARIEAAGVQSARIRSPLICEAPQGVCGTCYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQVNEQSHLESICDGTVHYRDIPTI
TDSRNRRLSLARNGEIVIMDTDGRERAMHRVPYGTHLLHENGASVAQGQRLAEWDPFTLP
VITEKPGIVRYQDLIDGRTLTEQVDEATGIAQRVVTENRAGGRAKKEDLRPRLTLLDDAS
GETARYMMAPGTTLSVEDGQEVQAGDVLARASREAAKTRDITGGLPRVAELFEARKPKDN
AIIAKISGRIEFIRDYKAKRKIAIIPEEGEPVEYLIPKSKVIDVQEGDYVKKGDNLISGS
PDPHDILEVLGVEALAEYLVAEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDGGDTTL
LPGEQVDLEEMNETNAKMPGGSRLAEGKPVLLGITKASLQTRSFISAASFQETTRVLTQA
AVEGKRDSLIGLKENVIVGRLIPAGTGAGMNRMRVAANSRDAALRAANRRLQEALIAPRT
AAEEHAAELAQGPEAAIGDDPLASVEGETHGTDADAADYLIKGDED
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacctgacgaaattcaccaaccagctgcccaagcccgaaaccttcgaccagatc
cagatcggtctggcgtcgcccgagcgcatccgcagctggtccttcggcgaaatcaagaag
ccggaaaccatcaactaccgcacgttcaagcccgaacgtgacggcctgttctgcgcccgc
atcttcggtcccgtgaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagtac
aagggcgtcgtctgcgaaaagtgcggcgtcgaagtgactgtgaccaaggtgcgccgcgag
cgcatgggccacatcgaactggccgcgccggttgcgcacatctggttcttgaagtcgctg
ccctcgcgcatcggcctgctgctcgacatgcagctcaagcagctggaacgcatcctctac
ttcgaaagctatgtggttatcgagccgggcatcaccccgcttgaacgctaccagctgctg
accgaagacgaactgctcgacgcgcaggacgaatatggcgaagacgccttttcggccggc
atcggcgccgaggcggtcaagcacatgctcatggacctcgacatggtccaggagcgcgaa
gacctgctcaaggagctgtccgagaccaagtcggaactcaagcccaagaagatcatcaag
cgcctcaaggtggtggaatcgttcatcgattccggcaaccgcccggaatggatgatcctc
gacgtggtgccggtcattccgcccgaactgcgcccgctggtgccgctcgacggcggccgc
ttcgccacctcggacttgaacgacctctatcgtcgcgtcatcaaccgcaacaaccgcctg
aagcgtctgatcgagctgcgtgcgcccgacatcatcgtgcgcaacgaaaagcgcatgctg
caggaagcggtcgacgcgctgttcgacaacggccgccgtggccgcgtgatcaccggcgcc
aacaagcgtccgctcaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgt
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtgaccggcccg
gaactcaagctgcaccagtgcggcctgcccaagaagatggcgctcgaactgttcaagccg
ttcatctatgcgcggcttgacgccaagggtctgtcgatgaccctgaagcaggccaagaag
tgggtggaaaaggaacgcaaggaagtctgggacatcctggacgaagtgatccgcgaacac
ccggtcatgctcaaccgtgcgcccacgctgcaccgtctgggcatccaggcgttcgaaccc
gtgctgatcgaaggcaaggcgatccagctgcacccgctcgtctgctcggccttcaacgcc
gacttcgacggtgaccagatggccgtccacgtgccgctttcgctggaagcccagctcgaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctctcgcccgccaacggcaagccgatc
atcgtgccttcgcaggacatggtgctgggcctctattacctgtcgatggaccgcaagggc
gagccgggcgaaggcatgctgctggccgacatggccgaagtgcaccaggcgctgtttgcc
ggcgcggtcaccatgcacaccaagatcgtggcgcgcgtgccgcagaccgacgagaacggg
aagtcctatctcaagcggtatgaaaccacgcccggtcgcatgctgatcggcgaatgcctg
cccaagagccacacggtgcccttcgagctggtcaaccgcctgctgacgaagaaggaaatc
gccgacgtcatcgaccaggtctatcgccacaccggccagaaggagactgtccttttcgcc
gacgcgatcatgagcctgggcttccgcaacgcgttcaaggcgggcatctcgttcggcaag
gacgacatgatcatcccggcgaccaaggacgctttcgtggccgagacgaaggaactcgtc
gccgactacgaacagcagtaccaggacggcctgatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggagccgttgcggcgaccaggtggccaacgccatgatggacgagatc
cgcgccacgccgagcgacgagcacggccgtgaaaagccgatcaactcgatctacatgatg
agccactcgggcgcgcgtggttcgccaacccagatgaagcagcttgccgggatgcgcggt
ctgatggccaagccttcgggcgagatcatcgaaacgccgatcatctcgaacttcaaggaa
ggcctgaccgtccttgaatacttcaactcgacccacggcgctcgtaagggcctggccgat
accgcgctcaagacggcgaactcgggttacctgacccgccgtctggtcgatgtgtcgcag
gactgcgtggtgacggtgaacgactgcgggaccgagcgggcgctggaaatgcgcgcgatc
gttcagggcggcgccaccatcgcctcgctgggcgaacgcatcctcggccgtaccctggcc
gaagacatgatcgaggcgaagaccggcaacgtgatctgcgaaaagggcacgctgcttgac
gaagccgcgatcgcccggatcgaagcggctggtgtccagtcggcgcgcatccgctcgccg
ctgatctgcgaagcgccccagggcgtgtgcggcacctgctatggccgtgaccttgcccgc
ggtacgccggtgaacatcggtgaagcggttggcgtcatcgccgcccagtcgatcggtgag
cccggcacgcagctgaccatgcgtacgttccacatcggtggcgccgcgcaggtcaacgaa
cagtcgcacctcgaatcgatctgcgacggtaccgtgcactatcgcgacatcccgacgatc
accgacagccgcaaccgccgcctgtcgctcgcccgcaacggcgaaatcgtgatcatggac
accgatggtcgcgaacgcgccatgcaccgcgtgccctatggtacccacctgctgcacgaa
aacggtgcgagcgtggcccagggccagcgcctggccgagtgggacccgttcaccctgccg
gtgatcacggaaaagcccggtatcgtgcgctatcaggacctgatcgacggccgcaccctg
acggaacaggtcgacgaagcgacgggtatcgcccagcgcgtcgtcaccgaaaaccgggcc
gggggccgcgccaagaaggaagacctgcgtccgcgcctgaccctgctcgacgacgcctcg
ggtgaaaccgcgcgctacatgatggcgccgggcaccaccctgtcggtggaagacggccag
gaagtccaggccggtgacgtgctggcccgcgccagccgcgaagccgccaagacccgcgac
atcacgggcggtctgccgcgcgtggccgagctgttcgaagcgcgcaagcccaaggacaac
gcgatcatcgccaagatctcgggccgcatcgagttcatccgcgactacaaggcgaagcgg
aagatcgcgatcatcccagaagagggcgaaccggtcgagtacctgatccccaagtccaag
gtgatcgacgtccaggaaggcgactacgtcaagaagggcgacaacctgatctcgggctcg
cccgatccgcacgacattctcgaggttctcggtgttgaggccctggcggaatacctcgtc
gcggaaatccaggaagtctatcgcttgcagggcgtgaagatcaacgacaagcacatcgag
gtgatcgttcgccagatgctgcagaaggtggaaatcaccgatggcggtgacaccaccctg
ctgccgggcgagcaggttgaccttgaggaaatgaacgaaaccaacgccaagatgccgggg
ggctcgcgcctcgcggaaggcaagccggtgctgctcggcatcaccaaggcttcgctgcag
acgcgttcgttcatctctgccgcgtcgttccaggaaaccacccgcgtgctcacgcaggcg
gcggtcgaaggaaagcgcgacagcctgatcggcctcaaggaaaacgtcatcgtcggccgt
ctcatccccgccggcaccggcgcgggcatgaaccgcatgcgcgtggcggccaacagccgc
gacgccgcccttcgcgccgccaaccgtcgccttcaggaagccctgatcgcgccgcgcacc
gccgctgaagagcatgccgccgaactggcccagggccccgaagccgcgatcggcgacgat
ccgctcgcctcggtcgaaggggaaacccacggcaccgacgccgatgcggccgattacctg
atcaagggcgacgaggactga
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