KEGG   Novosphingobium capsulatum: U0041_02510
Entry
U0041_02510       CDS       T10206                                 
Name
(GenBank) AMP-dependent synthetase/ligase
  KO
K01897  long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
Organism
ncp  Novosphingobium capsulatum
Pathway
ncp00061  Fatty acid biosynthesis
ncp00071  Fatty acid degradation
ncp01100  Metabolic pathways
ncp01212  Fatty acid metabolism
ncp02024  Quorum sensing
ncp04146  Peroxisome
Module
ncp_M00086  beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:ncp00001]
 09100 Metabolism
  09103 Lipid metabolism
   00061 Fatty acid biosynthesis
    U0041_02510
   00071 Fatty acid degradation
    U0041_02510
 09140 Cellular Processes
  09141 Transport and catabolism
   04146 Peroxisome
    U0041_02510
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    U0041_02510
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01004 Lipid biosynthesis proteins [BR:ncp01004]
    U0041_02510
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ncp04147]
    U0041_02510
Enzymes [BR:ncp01000]
 6. Ligases
  6.2  Forming carbon-sulfur bonds
   6.2.1  Acid-thiol ligases
    6.2.1.3  long-chain-fatty-acid---CoA ligase
     U0041_02510
Lipid biosynthesis proteins [BR:ncp01004]
 Acyl-CoA ligase
  Long/very long chain acyl-CoA ligase
   U0041_02510
Exosome [BR:ncp04147]
 Exosomal proteins
  Exosomal proteins of breast milk
   U0041_02510
  Exosomal proteins of breast cancer cells
   U0041_02510
SSDB
Motif
Pfam: AMP-binding AMP-binding_C_3 AMP-binding_C
Other DBs
NCBI-ProteinID: WQD94796
LinkDB
Position
complement(555338..557119)
AA seq 593 aa
MPNLVSLFLARAAQHGDAPFLSAKRQGTWVAQSWRSVADQVCLLAQALRALGLNPGDRVM
LVSENRPEWCIADIAIMAAGLVTVPTYTTNTARDHLHILENSGARAIIVSNAKLAQPLLA
AALNAPCAEHVIGIEPLRQQQAGTLHFHDWETLLQGDAAAARAAVSQRIAAIRREDLACI
IYTSGTGGAPRGVRQHHGAILANVAGAAQVLAEDFHLGDDQFLSFLPLSHAYEHTGGQWL
PIGVGARIAYAESLEKLASNIEEVRPTIMVVVPRLFEVLRARIIKQIEKQGRVATWLMDR
ALAIAAHQEETGHLRLIDRPLNLLIERTLRPKVRARFGGRIKALVSGGAPLNPEVGLFFE
AMGLTMLQGYGQTEAGPVIACNRPAAGIRMDTVGPPLAGVEVAIAPDGEILVRGELVMHG
YWHNDAETARAIQDGWLHTGDIGHIDGQGRIKITDRKKDMIVNDKGDNVSPQKIEGMLTL
QPEIAQAMVSGDKRPYVVGLIVPDAEWAMQWSVENDAPHDLARLADLPAFRSAMREAVDR
VNRDLSVIEKVRQFTLADEPFAIANEELTPSLKIRRHKIRERYGARMDALYKG
NT seq 1782 nt   +upstreamnt  +downstreamnt
atgccgaacctggtcagcctgtttctggcccgcgcggcgcagcatggcgatgcgccgttc
ctttcggccaaacgccagggcacctgggtggcgcaatcgtggcgcagcgtggccgatcag
gtctgccttctggcgcaggccctgcgcgccctcggcctcaatcccggtgaccgggtcatg
ctggtgtcggaaaaccgccccgaatggtgcattgccgatatcgcgatcatggccgccggg
ctggtcaccgtgcccacctacaccaccaataccgcgcgcgatcacctccatatcctggaa
aattccggggcgcgcgcgatcatcgtatcgaatgccaagctggcccagccgctgcttgcc
gccgcgctcaacgcgccttgcgccgagcatgtgatcggcatcgaaccgctgcgccagcag
caggccggcacgctgcatttccatgattgggaaaccctgctgcagggcgatgccgccgcc
gcccgcgcggccgtgagccagcggattgccgcgattcggcgcgaggatctggcctgcatc
atctacaccagcggaaccggcggcgccccgcgcggggtgcgccagcaccatggtgcgatc
ctcgccaacgtggccggcgcagcccaagtcctggccgaggatttccacctgggcgatgac
cagttcctctcgttcctgcccctgagccacgcctatgaacacaccggcgggcaatggctg
ccgatcggcgtgggcgcgcgcattgcctatgccgaaagcctggaaaagctcgcaagcaac
atcgaggaagtgcgccccacgatcatggtggtggtgccgcgcctgttcgaagtgctgcgt
gcccggatcatcaagcagatcgaaaagcaggggcgtgtggcgacatggctgatggaccgc
gccctggcgatcgctgcccaccaggaagagaccgggcatctgcggctgatcgatcggccg
ctcaacctgctgatcgaacgcaccttgcgccccaaggtgcgggcgcgctttggcgggcgg
atcaaggcgctggtatcgggcggcgcgccgctcaaccccgaagtcgggctattcttcgag
gccatggggctgaccatgctgcaaggctatggccagaccgaggctggcccggtgatcgcc
tgcaaccgcccggccgccggcattcgcatggataccgtcggcccgccgcttgctggcgtg
gaagtggccatcgcgcccgacggtgaaatcctggtgcgcggcgaactggtgatgcacggc
tattggcacaacgatgccgaaaccgcccgcgccatccaggatggctggctgcacaccggc
gatatcggccacatcgatggccagggccgcatcaagatcaccgatcgcaagaaagacatg
atcgtcaacgacaagggcgacaatgtctctccgcaaaagatcgagggcatgctcaccctt
cagcccgaaatcgcccaggccatggtatcgggcgacaagcgcccctacgtggttggcctg
atcgtgcccgatgccgaatgggcgatgcagtggtcggtggaaaacgacgccccccacgat
ctggcgcggctggccgatctgcccgccttccgcagcgcgatgcgcgaggcggtggaccgg
gtgaaccgtgatctgtccgtgatcgaaaaggtgcgccagttcaccttggccgacgaaccc
tttgccatcgccaacgaggaactcaccccctcgctcaagatccgccgccacaagattcgc
gaacgctatggcgcgcggatggacgcgctgtacaagggataa

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