Novosphingobium capsulatum: U0041_02575
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Entry
U0041_02575 CDS
T10206
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ncp Novosphingobium capsulatum
Pathway
ncp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U0041_02575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncp03019
]
U0041_02575
Enzymes [BR:
ncp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
U0041_02575
Messenger RNA biogenesis [BR:
ncp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U0041_02575
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
NAD_binding_3
Motif
Other DBs
NCBI-ProteinID:
WQD93503
LinkDB
All DBs
Position
complement(576666..578231)
Genome browser
AA seq
521 aa
AA seq
DB search
MSYFSDLGLAEPILRALETKGYTDPTPIQRQSIPALLEGRDLLGIAQTGTGKTAAFALPS
LHRLAADPQPRKPASCRMLVLSPTRELAAQIADNMKGYAKNLRLTVDCVFGGIPIGKQAR
RLVPGVDILVATPGRLLDLIDNRALTIGRTEIFVLDEADQMMDLGFIHALKRVANLLPAK
RQSLFFSATMPKSIEDLGKQFIKNPVRVEVAPQSTTAERVEQFVSFLNQPEKQALLSLTI
RRLLAEKQLDRGIVFTRTKHGADRVARNLSAAGIDARAIHGNKSQAQRTAALEAFRQGSC
PVLVATDIAARGIDVSGVSHVFNFELPNVPEQYVHRIGRTARAGADGVAISFCAPDEKPY
LRDIERLTKVKPDVMPLPENFLADAARLPAPVRRAAEDTDMRRDQPRGRAGGGRRDGGRS
DGGRQDGGRRDGRRDGGPRQDAPRADNRGEPRRDDTRRSDAPRSDTPRSADRTGQDRRRS
DAPRSDAARHDAGGEAAAKRRFRPRGPATTGQHRNKVRRVV
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgtcctatttttctgaccttggccttgccgagccgattctccgcgcgcttgaaaccaag
ggctacaccgatcccaccccgatccagcgccagtcgattcccgcgctgctcgaagggcgc
gatcttctcggcatcgcacaaaccggcaccggcaagaccgccgcgttcgcgctgccctcg
ctgcaccgcctggccgccgatccgcagccgcgcaagccggcgtcgtgccgcatgctggtg
ctttcgccgacccgcgaactggccgcccagatcgccgacaacatgaagggctatgccaag
aacctgcgcctgacggtcgattgcgtgttcggtggcattcccatcggcaagcaggcccgc
cgcctggtgccgggcgtcgatatcctggtggccacgccaggccgcctgctcgacctgatc
gacaaccgcgcgctgaccatcggccgcactgaaatcttcgtgctcgacgaagccgaccag
atgatggacctgggcttcatccatgcgctcaagcgcgtggccaacctgctgccggccaag
cgccagagcctgttcttttccgccaccatgcccaagtcgatcgaagacctgggcaagcag
ttcatcaagaacccggtgcgcgtggaagtggccccgcaatcgaccacggccgaacgcgtc
gaacagttcgtcagcttcctcaaccagccggaaaagcaggcgctgctgtcgctgacgatc
cgccgcctgctggccgaaaagcagctcgatcgcggcatcgtgttcacccgcaccaagcat
ggtgccgatcgcgtggcgcgcaatctttcggccgccggcatcgatgcccgcgccatccac
ggcaacaagagccaggcgcagcgcaccgccgcgctcgaagcgttccgccagggttcgtgc
ccggtgctggtggcaaccgacattgccgcacgcgggatcgacgtttcgggggtgagccac
gtgttcaacttcgaactgcccaacgtgcccgagcaatatgtgcaccgcattggccgcacc
gcgcgcgccggtgccgatggcgtggcgatcagcttctgcgcgcctgatgaaaagccctac
ctgcgcgatatcgagcgcctcaccaaggtgaagcccgatgtcatgccgctgccggaaaac
ttcctggcagatgcggcacgcctgcccgcacccgtgcgtcgcgcggccgaagacaccgac
atgcgccgcgaccagccgcgtggccgcgccggtggtggccgtcgcgatggcgggcgcagc
gacggtggccgccaggacggcggacgccgcgatggccgccgtgatggtggcccgcgccag
gacgccccccgcgccgacaatcgcggcgagccccgccgtgacgacacgcgccgcagcgac
gcaccccgcagtgacacgccgcgcagcgcagaccgcacgggccaggatcgccgtcgcagc
gatgccccgcgcagcgatgccgcccggcacgacgccggtggtgaagcggctgccaagcgc
cggtttcgcccgcgcggcccggccacaaccggccagcaccgcaacaaggtgcgccgcgtg
gtctga
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