Novosphingobium capsulatum: U0041_03260
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Entry
U0041_03260 CDS
T10206
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ncp Novosphingobium capsulatum
Pathway
ncp04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ncp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
U0041_03260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncp03019
]
U0041_03260
03009 Ribosome biogenesis [BR:
ncp03009
]
U0041_03260
04131 Membrane trafficking [BR:
ncp04131
]
U0041_03260
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ncp04147
]
U0041_03260
Messenger RNA biogenesis [BR:
ncp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
U0041_03260
Ribosome biogenesis [BR:
ncp03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
U0041_03260
Membrane trafficking [BR:
ncp04131
]
SNARE
SNARE associated proteins
Others
U0041_03260
Autophagy
Aggrephagy
Other aggrephagy associated proteins
U0041_03260
Exosome [BR:
ncp04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
U0041_03260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_22
AAA_5
CDC48_2
AAA_33
AAA_2
AAA_14
TIP49
nSTAND3
IstB_IS21
AAA_28
NPHP3_N
AAA_7
RNA_helicase
AAA_3
AAA_18
Mg_chelatase
Sigma54_activat
ABC_tran
AAA_30
AAA_17
AAA_19
DUF815
TsaE
AAA_24
Zeta_toxin
AAA_11
Parvo_NS1
NB-ARC
bpMoxR
PhoH
ATPase
Motif
Other DBs
NCBI-ProteinID:
WQD93621
LinkDB
All DBs
Position
complement(727219..729534)
Genome browser
AA seq
771 aa
AA seq
DB search
MAEAATLGENRIARLQVAGARQEESGHGIARISRAVMGTLGVTEGDVIEIIGKRSTAARV
MLPYPEDEGLELIRLDGLQRANADVGSGDHVEVRRIDSRPAQRVVFAPAQRDLRLQGPAA
ALKRNFAGRPLLTGDLVATAGQQQVNRGDMPAQLRQMLNAPAFALTQIRLTVVSTVPKGV
VHIDESTEVELRAEYEEPRSSRADVNYDDVGGMGDTIRQLREMVELPLRYPELFTRLGVD
PPKGVLLHGPPGTGKTRLARAVANESDASFFTINGPEIMGSAYGESEKRLREVFEEATQN
APSIIFIDEIDSIAPKRSQVSGEAEKRLVAQLLTLMDGLHSRSNLVVIAATNRPDALDEA
LRRPGRFDREIVVGVPDEPGRREILGIHTRGMPLSEDVDLRELARTTHGFVGADLAALAR
EAAIEAVRRIMPRLDFERQTIPPEVLDNLRVVRDDFLEALKRVQPSAMREVMVQAPTIGW
SDVGGLDDAQAKLKEGVELPLKTPEAFHRLGIRPAKGFLLYGPPGTGKTLLAKAVAKEAE
ANFIAIKSSDLLSKWFGESEQQIARLFARARQVAPCVIFIDEIDSLVPARGTGVGEPQVT
ARVVNTILAEMDGLEELQSVVLIGATNRPNLVDPALLRPGRFDELVYVGTPSLEGRAHIL
KIHTGAMPLAADVDLLDVARQTARFTGADLEDVVRRAGLNAIRRAGGNVQSVNAADFADA
LADSRATVTEEMEAEYARMKGELKKRAVEPSPTIGFLAPGMVQSTRETKHG
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggcagcaactttgggcgaaaatcgcatcgcccgtcttcaggtcgcaggcgcc
aggcaagaggaatccggccacggcatcgcccgcatcagccgtgccgtgatgggcacgctg
ggcgtaaccgaaggcgacgtcatcgaaatcatcggcaagcgcagcaccgccgcgcgcgtg
atgctgccctatcccgaggatgaagggctcgaactgatccggctcgacggtctgcagcgc
gccaacgccgatgtcggctcgggcgatcatgtcgaagtgcggcggatcgattcccgcccg
gcacagcgcgtggtgtttgccccggcgcagcgtgatctgcgcctgcaggggccagctgcc
gcgctcaagcgcaactttgctgggcgcccgctgctcaccggcgatctggtcgcgacggcg
gggcagcagcaggtcaaccggggcgacatgcctgcccagttgcgccagatgctcaacgct
ccagccttcgcgctgacccagatccgcctcaccgtcgtctccaccgtgcccaagggcgtg
gtgcacatcgacgagagcaccgaggtggaactgcgcgcggaatacgaagagccgcgcagc
agccgcgccgacgtcaactatgacgatgtcggtggcatgggcgacaccatccgccagttg
cgcgagatggtcgaactgccgctgcgctatcccgaactgttcacccgcctgggcgtcgat
ccgcccaagggcgttctgctgcatggcccgccaggcaccggcaagacccgcctggcccgc
gctgtggcgaacgaaagcgacgccagcttcttcaccatcaacggcccggaaatcatgggc
tcggcctatggtgaaagcgaaaagcgcctgcgcgaagtgttcgaggaagcgacccagaac
gcgccctcgatcatattcatcgacgagatcgattcgatcgcgcccaagcgcagccaggtt
tccggcgaagcggaaaagcgcctcgtcgcgcagctgctcacgctgatggacgggctgcac
agccgctccaaccttgtcgtcatcgccgccaccaaccggcctgacgcgctggatgaagca
ctgcgccgccccggccgctttgaccgcgagatcgtcgtcggcgttcccgatgaacctggc
cgccgcgagattctcggcatccacacgcgcggcatgccgttgtccgaggatgtcgacctg
cgcgaactcgcccgcactacgcatggctttgtcggtgccgatctggcagcgctcgcccgt
gaggcggcgatcgaggcggtgcgccgcatcatgccgcgtctcgatttcgaacggcagacg
atcccgcccgaagtgctcgacaacctgcgcgtcgtgcgcgacgatttcctcgaggcgctc
aagcgcgtgcagccttcggccatgcgcgaggtcatggttcaggcccccaccatcggctgg
tccgatgtcggtgggctcgacgatgcccaggccaagctcaaggaaggcgtcgaactgccg
ctcaagacgcccgaggccttccaccgcctcggcatccgcccggccaagggcttcctgctc
tacggcccgcctgggaccggcaagaccctgctggccaaggccgtcgccaaggaagccgaa
gccaactttattgcgatcaagtcgtcagacttgctcagcaagtggtttggcgaaagcgag
cagcagatcgcccgcctgtttgcccgcgcccgccaggtcgcgccgtgcgtgatcttcatc
gacgagatcgacagcctcgttccggcgcgcggcacgggtgtcggcgagccgcaggtcacg
gcgcgcgtggtcaacaccatcctggccgagatggacgggctggaagagctgcagtcggtc
gtgctgatcggcgcgaccaaccggcccaacctggtcgatcctgcgctgctgcggccgggc
cggttcgatgaactggtctatgtcggcacgcccagcctggaaggccgcgcgcatatcctc
aagatccacaccggcgccatgccgctggcggccgatgtcgatctgctcgatgtcgcccgc
cagaccgcgcggtttaccggtgccgatctcgaagacgtggtgcgccgcgccggcctcaac
gccatccgccgcgccggcggcaacgtgcagtcggtcaatgcggcggattttgccgatgct
ctggccgattcccgcgcgacagtgaccgaagaaatggaggcggaatacgcccggatgaag
ggtgagctcaagaagcgcgccgtggagccgagcccgaccatcggcttcctggcgccgggc
atggtgcaatccacccgcgaaaccaagcacggctga
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