Novosphingobium capsulatum: U0041_04180
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Entry
U0041_04180 CDS
T10206
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
ncp Novosphingobium capsulatum
Brite
KEGG Orthology (KO) [BR:
ncp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncp03032
]
U0041_04180 (gyrB)
03400 DNA repair and recombination proteins [BR:
ncp03400
]
U0041_04180 (gyrB)
Enzymes [BR:
ncp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
U0041_04180 (gyrB)
DNA replication proteins [BR:
ncp03032
]
Prokaryotic type
DNA Topoisomerases
U0041_04180 (gyrB)
DNA repair and recombination proteins [BR:
ncp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
U0041_04180 (gyrB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
GyrB_insert
HATPase_c_3
VirC2
Motif
Other DBs
NCBI-ProteinID:
WQD93804
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Position
904980..907505
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AA seq
841 aa
AA seq
DB search
MASTNENTPNTNSYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEA
LAGHCDLVLIELNPDGSVSVEDNGRGIPTGIHAEEGVSAAEVIMTQLHAGGKFENTSDDN
AYKVSGGLHGVGVSVVNALSEWLELTIWREGQEHWMKFAHGDAVAPLKVTGPAPTADNGK
PKKGTRVTFFASHDTFKNVTEFDFDKLEHRYRELAFLNSGVRILLRDKRHEEVKEHDLYY
EGGIAAFVKYLDRNKQALIPEPIAISAMRDGIGIDVSLEWNDSYYENVLCFTNNIPQRDG
GTHLAAFRAALTRTLNGYADRSGLLKKEKVSLSGDDMREGLTAIVSVKLPDPKFSSQTKD
KLVSSEVRQPLESLMADKMSEWLEENPAHAKSVILKVIDAAAAREAARRARELTRRKGAM
DIASLPGKLADCQERDASKCELFLVEGDSAGGSAKQGRDRKTQAILPLRGKILNVERARF
DRIISSREVGTLIQAMGTGIRDEFNLEKLRYHKIVIMTDADVDGAHIRTLLLTFFHRQMP
DIIRAGHLFIAQPPLYKVAKGRSEVYLKDNAALDRYLVEAGTTGRILETQGGARGSQELA
ELVDHALRLRNLMAFVPRRYNPDIVEALALAGALDPDLSADARIAALANAASWLDRGDPE
AQWAAQMSEDGGYHIQRAWRGVTDHHMIEAGFLTSAEARKLARLAAEHADVYAGVARLVR
AGAAPAEPESTGATDGEEAPAAAARADSKDAGITRPSQLLEAVMANGRKGLSIQRYKGLG
EMNAEQLWETTLDPEVRSLLQVKVEDADVTDEIFTRLMGDVVEPRRDFIQENALNVANLD
V
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggccagcaccaacgaaaataccccgaacaccaactcctacggcgccgactcgatcaag
gtcctcaagggcctggatgcggtgcgcaagcgtcccggcatgtacatcggcgataccgac
gatggctcgggcctgcatcacatggtcttcgaagtgtcggacaacgccatcgacgaggca
ttggccgggcattgcgacctggtgctgatcgagctgaaccccgatggttcggtctcggtg
gaagacaacgggcgcggtattcccaccggcatccatgccgaagaaggcgtttccgccgcc
gaagtgatcatgacccagctccacgccggcgggaagttcgagaacacgtctgacgacaac
gcctacaaggtgtcgggcggcctgcacggcgtgggcgtctcggtggtcaatgccctgtcg
gaatggctggagctgacgatctggcgcgaaggccaggaacactggatgaagtttgcccat
ggcgatgccgtggcgccgctcaaggtgaccggcccggcaccgacggcggacaacggcaag
cccaagaagggcacccgcgtcaccttctttgccagccacgacacgttcaagaacgtgacc
gagttcgatttcgacaagctcgaacaccgctatcgcgaactcgccttcctcaattctggt
gtgcgcatcctgctgcgcgacaagcgccatgaagaggtcaaggaacatgatctctattac
gagggcggcattgcggccttcgtgaaatacctcgatcgcaacaagcaggcgctgatcccc
gaaccgatcgccatttcggcgatgcgcgacggcatcggcatcgacgtgtcgctggaatgg
aacgacagctattacgaaaacgtgctgtgtttcaccaacaacatcccgcagcgcgatggc
ggtacccatctggccgcattccgcgccgcgctgacccgcacgctcaacggctatgccgat
cgctcgggcctgctcaagaaggaaaaggtctcgctctcgggcgatgacatgcgcgaaggg
ctcaccgcgatcgtctcggtcaagctgcctgatccgaagttttccagccagaccaaggac
aagctggtttcctccgaagtgcgccagccgcttgaaagcctgatggccgacaagatgagc
gaatggctggaggaaaacccggcccatgccaagtcggtgatcctcaaggtgatcgacgcc
gctgccgcgcgcgaggccgcgcgccgtgcccgcgaactgacccgccgcaagggcgcgatg
gacatcgccagcctgcccggcaagctggccgattgccaggaacgcgacgccagcaagtgc
gaactgttcctggtcgaaggggactcggccggtggcagcgccaagcagggccgtgaccgc
aagacgcaggcgatcctgcccttgcgcggcaagatcctcaacgtggagcgcgcgcggttc
gatcgcatcatttcctcgcgcgaagtgggcacgctgatccaggcgatgggcaccggcatc
cgcgatgaattcaacctggaaaagctgcgctatcacaagatcgtgatcatgaccgacgcc
gacgtcgacggcgcgcatatccgcaccttgctgctcaccttcttccaccgccagatgccc
gacatcatccgggccgggcacctcttcatcgcccagccgccgctctacaaggtcgccaag
ggacgcagcgaagtctatctcaaggacaacgccgcgctcgatcgctacctggtggaggcc
ggtaccacgggccgcatcctggaaacccagggtggcgcgcgcggcagccaggaactggcg
gagctggtcgatcacgcgttgcgcctgcgcaacctcatggccttcgtgccgcgtcgctac
aacccggatatcgtggaagcgctggcgctggccggtgcgctcgatcccgatctctcggcc
gatgcccgcatcgccgcgctggccaatgccgcaagctggctggatcgtggcgatcccgag
gcgcagtgggcggcgcagatgagtgaggatggcggctatcacatccagcgcgcctggcgc
ggggtgaccgaccatcacatgatcgaggccggcttcctgaccagtgccgaagcgcgcaag
ctcgcccgcctcgcggccgaacacgccgatgtctatgccggtgttgcccgcctggtgcgt
gccggcgctgcgccggccgagccggaaagcacgggcgccaccgatggcgaggaagccccc
gccgccgcggcccgggccgacagcaaggacgccggcatcacccggccttcgcaactgctc
gaagcggtcatggccaatggccgcaagggcctgtcgatccagcgctacaagggcctgggt
gaaatgaacgccgaacagctgtgggaaaccacgctcgatccggaagtccgttcgctgctc
caggtcaaggtggaagacgccgacgtgaccgacgagatctttacccgcctgatgggcgac
gtggtcgagccgcgccgcgatttcattcaggaaaacgccctcaacgtggccaacctggac
gtctga
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