Novosphingobium capsulatum: U0041_07050
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Entry
U0041_07050 CDS
T10206
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ncp Novosphingobium capsulatum
Brite
KEGG Orthology (KO) [BR:
ncp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncp03019
]
U0041_07050 (hrpB)
Enzymes [BR:
ncp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
U0041_07050 (hrpB)
Messenger RNA biogenesis [BR:
ncp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
U0041_07050 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_30
Flavi_DEAD
HA2_N
CON_HrpB
AAA_19
Cas3-like_C_2
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WQD94333
LinkDB
All DBs
Position
1524644..1527190
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AA seq
848 aa
AA seq
DB search
MTDLPIHAVLPDLLAALAASPNAVLIAPPGAGKTTTVATALLGEAWCTGTVILLSPRRVA
ARAAAERMADLLGEAPGETVGYLTRLDSKRSARTRVLVMTEAIFVATILADPELTGVSAV
LFDEAHERHLDSDLGLALALEAQGVLREDLRVVVMSATLDGTRFAGLMGADANCQAAVIE
SAGKAHPLRIRWLGSSPQLRTEQAVANAIALAWGEETGDILAFLPGVRDIDRTAEILAQR
LPHALVLPLHGQVDPAGQRAAIRRDREGRRRIVLATAIAETSLTLDGVAVVVDAGLSRRA
EFDKVAGVTRLVTTRASQAAAAQRAGRAARQGPGVAYRLWEEAAHAGRATFDPPEILNAD
LAPLALTLAQWGAGDPAAMAWIDPPPPAAMAAAQAALAALGALDGAGRITPHGRAMASLP
MEPALAHMLLFAARHGAAQDAARLALLLQERGLGGSGDDLARRFDRWQGDRGARADASRK
LAARWANMAERAARGAFDKRSPNGVEGVSQGSVRPEPVEGRQRNAARPPLAVLLAEGFPD
RIARARGASGEEWLSAGGRGYRLDPASPLATARWLVIGDAQGEAKGARIMSALALDEDDV
TTWLAHRMDQRHTLTWNAGEGRVEARLERRLGAIVLARVPDPSPQPAAVTALLLDVVRRE
GLAALPLGAAAQALLTRARYAGLAALDEATLLADLEEWLAPLLAGRRDLAIAAGKLHEAL
ENRLDWNERQTLDRLAPPHYRSPAGTGHAIDYAHEGGPAVELRVQALFGLDRHPTIGQPP
RPLLLSLTSPAGRPIQTTADLPAFWRGSWRDVVKDMKGRYPRHRWPEQPWTEDPSLKTRN
AFEATRKG
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacctgcccatccacgccgtcttgcccgatctgctggctgccctggctgccagc
cccaatgccgtgctcatcgcgccgccgggcgcgggcaagacgaccacggtggccacggcc
ttgctgggcgaggcgtggtgtaccggcacggtgatcctgttgtcgccccgccgcgtggcg
gcgcgcgctgcggccgagcgcatggccgacctgctgggcgaggcgccgggcgagacggtc
ggctatctcacccggctcgacagcaagcgatcggcacgcacccgcgtgctggtgatgacc
gaggcgatctttgtcgccacgatcctggccgatcccgaactgaccggcgtttcggccgtg
ctgtttgacgaagcgcacgaacggcatctcgattccgaccttggcctggcgctcgcgctg
gaagcgcaaggcgtgctgcgcgaggatctgcgcgtggtggtgatgtcggccacgctcgac
ggcacgcgctttgccgggctgatgggcgcggatgcgaactgccaggcggcggtgatcgaa
agcgccggcaaggcccatcccttgcgcattcgctggctgggcagcagtccgcagttacgc
accgagcaggccgtggccaatgccattgccctggcctggggcgaagagacaggcgacatt
ctggcgttcctgcccggcgtgcgcgacatcgatcgcacggccgaaatcctcgcgcagcgc
ctgccccacgcgctggtgctgccgctgcacgggcaggtcgatccggcaggccagcgcgcc
gctatccgccgcgatcgcgagggccggcgccggatcgtgctggcgacagcgattgccgaa
acttcgttgacgcttgatggcgtggcagtggtggtcgatgccggcctgtcgcgccgggca
gagttcgacaaggtggcaggggtgacccgcctggtgacgacccgcgccagccaggccgcc
gccgcgcagcgtgctgggcgtgccgcgcgccaggggccgggcgtggcctatcgcctgtgg
gaagaagccgcccacgccgggcgcgcgacgttcgatccgcccgaaatcctcaatgccgat
ctggcccccctggcgctgactctggcgcaatggggcgcgggcgatccggcggcgatggcc
tggatcgatccaccaccgcctgccgccatggccgcggcgcaagcggcgctggcggcgctg
ggcgcgctcgacggggcggggcggatcacgccgcatggccgcgccatggccagcctgccg
atggagccggcgctggcgcacatgctgctgtttgccgcccgccatggcgcggcgcaggat
gcggcacggctggcgctgctgctgcaggaacgcggccttggcggcagcggcgatgatctc
gcccgccggttcgatcgctggcagggcgatcgcggggcgcgggccgatgcttcgcgcaag
ctggccgcgcgctgggccaatatggcggaacgggcagcgcggggggccttcgacaagcgc
agcccgaacggggtggagggcgtgtcccaaggttccgttcgccctgagcctgtcgaaggg
cgccagcgcaacgcagcaaggccgccgctagccgtgcttctggccgaaggctttcccgat
cgcatcgcccgcgcacgcggtgccagcggagaggaatggctttcggccggtgggcgcggc
tatcgcctcgatcccgcctctccgctggccacggcgcgctggctggtgatcggcgacgcg
cagggagaggccaagggcgcccggatcatgagcgcgcttgccctggacgaggacgacgtg
acgacctggctggcccatcgcatggaccagcgccacaccctgacgtggaacgccggcgaa
ggccgggtggaagcgcggctcgagcggcggctgggcgcgatcgtgctggcccgggtgccc
gatccatcgccacagccggcagcggtcacggctctgctgctcgatgtggtgcggcgcgaa
gggctggcggcgctgccgctgggcgctgcggcgcaagcgctgctgacccgcgcgcgctat
gccgggctggccgcgctcgacgaagcgaccctgctcgccgatctggaggaatggctggcc
cccttgctggccgggcggcgcgatctggccatcgcggcgggcaagctgcacgaggcgctg
gaaaaccggctggactggaacgagcggcagacgctcgatcggctggcgccgccgcactat
cgctcgcccgccgggaccggccatgccatcgactatgcacacgaaggcggcccggcggtg
gaactgcgggtgcaggcactgttcggccttgatcgccatcccaccatcggccagccgccg
cgcccgctgctgctgtcgctcacctcgcccgccggccggccgatccagaccacggctgat
ctgcccgcgttctggcgcggatcgtggcgcgatgtggtgaaggacatgaagggccgctat
ccccgccatcgctggcccgaacagccgtggacagaagaccccagcctcaagacccgcaac
gcgttcgaggcgacgcgcaagggctga
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