Novosphingobium capsulatum: U0041_08055
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Entry
U0041_08055 CDS
T10206
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ncp Novosphingobium capsulatum
Pathway
ncp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ncp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
U0041_08055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncp03021
]
U0041_08055
03400 DNA repair and recombination proteins [BR:
ncp03400
]
U0041_08055
Enzymes [BR:
ncp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
U0041_08055
Transcription machinery [BR:
ncp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
U0041_08055
DNA repair and recombination proteins [BR:
ncp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
U0041_08055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF211
IDH
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
WQD94523
LinkDB
All DBs
Position
1731285..1732346
Genome browser
AA seq
353 aa
AA seq
DB search
MTVNIKNWQELKKPNNLDIKPGHDPKRRATFVAEPLERGFGLTLGNALRRVLLSSLQGAA
VTSIKIENVLHEFSSLAGVREDVTDIVLNVKQIALKMQGEGPKRLQLSAIGPGEVKAGDI
AVTGDIEVMNKDLVICHLDEGATFNMELTCDTGKGYVPAVSNRPVDAPIGLIPVDSLYSP
VRQVSYKVDNARIGQELDYDKLSLSVETDGTVTPEDAVAYAARILQDQLALFVHFDDQVP
TGHVPSLAGVAAHAPEESDANQLNRYLLKKVDELELSVRSANCLKNDNIIYIGDLVQKTE
AEMLRTPNFGRKSLNEIKEVLSSMGLRLGMDIPGWPPENIEEMAKKLEQELLG
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcaacatcaagaactggcaggaactgaagaagcccaacaatctcgacatcaag
cccggccacgatccgaagcgtcgcgcgactttcgttgccgaaccgcttgagcgtggcttt
ggtcttaccctcggcaatgcgctgcgccgggtgctgctctcttcgcttcagggggctgcg
gttacgtcgatcaagatcgagaacgtgctgcacgaattctcgtcgcttgccggcgtgcgt
gaagacgtcaccgacatcgtgctcaacgtcaagcagatcgcgctcaagatgcagggcgaa
ggccccaagcgtcttcagctttccgcgatcgggccgggcgaagtcaaggccggcgatatc
gccgtgaccggcgacattgaggtgatgaacaaggatctggtgatctgccatctggatgaa
ggcgcgaccttcaacatggaactcacctgcgacaccggcaagggctatgtcccggccgtg
tcgaaccgcccggtggatgcaccgatcggtctgatcccggtggactcgctttactcgccc
gtgcgtcaggtgtcctacaaggtggacaacgcccgcatcggccaggagcttgactacgac
aagctcagcctttcggtcgaaaccgatggcaccgtcaccccggaagacgccgtggcttat
gctgcgcgcatccttcaggaccagctggcgctgttcgtccacttcgacgaccaggtgccg
accggccacgtgccgtcgctggccggcgttgccgcccatgcgccggaagaaagcgacgcc
aaccagctcaaccgctacctcctcaagaaggtggacgagctggaactgtcggtgcgttcg
gccaactgcctgaagaacgacaacatcatctacatcggcgacctggtccagaagaccgag
gccgagatgctccgcacgccgaacttcggccgcaagtcgctcaacgagatcaaggaagtg
ctctcgtcgatgggtctgcgcctcggcatggacatccccggctggccgccggaaaacatc
gaggaaatggccaagaagctcgagcaggaactgctcggctga
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