Novosphingobium capsulatum: U0041_10110
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Entry
U0041_10110 CDS
T10206
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ncp Novosphingobium capsulatum
Pathway
ncp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U0041_10110 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncp03019
]
U0041_10110 (pnp)
03016 Transfer RNA biogenesis [BR:
ncp03016
]
U0041_10110 (pnp)
Enzymes [BR:
ncp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
U0041_10110 (pnp)
Messenger RNA biogenesis [BR:
ncp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
U0041_10110 (pnp)
Transfer RNA biogenesis [BR:
ncp03016
]
Prokaryotic type
tRNA degradation factors
U0041_10110 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
S1_2
Motif
Other DBs
NCBI-ProteinID:
WQD91377
LinkDB
All DBs
Position
2200634..2202949
Genome browser
AA seq
771 aa
AA seq
DB search
MFDVKTVSLEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKFSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVICQVMSY
DGETEPDIVALVAASAALTISGVPFMGPIGAARVGFKDGEYQLNPSLSEAASGRLDLVVA
ATDAAVMMVESEAKELTEEEMLGAVVFAHNESRKVIGAIIELAEKAAKDPWEIDLSDNTA
DIKAKLKKGVGADIAAAYKLTDKSARSNALNDVRAKAKTLFADETPQTQMVAIKTLKKLE
AEIVRGAIIKDGQRIDGRTVTQVRPIESIVGFLPRTHGSSLFTRGETQAICTTTLGTKDA
EQMIDGLDGLSYQRFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALNPVLPTKDEF
PYTIRVLSDITESNGSSSMATVCGGCLSMMDAGVPIARPVSGIAMGLILEGKDFAVLSDI
LGDEDHLGDMDFKVAGTSEGITSLQMDIKIAGITEEIMRKALAQAKEGRAHILGEMTKAL
GSARNELSAHAPRIETLQIDKSKIREVIGTGGKVIREIVAETGAKVDIDDEGLIKISSSD
LSQIEAAKNWILGIVEEPEVGKVYNGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERVEK
PGDVVKEGQEVKVKVLEIDNRGKVRLSMRVVDQETGEALEDTRPAREPREPRGDRGDRGD
RGGDRRGPRSDRGPRRDGDRGPRREGGDRPRRDRDEGPAPDHMPAFLKSDD
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacgtcaagaccgtatcgctggagtggggcggaaagaccctcactctggaaact
ggccgcattgcgcgccaagccgatggtgccgtgctggcaacctatggcgaaaccgttgtg
ctttgcgcggtgaccgccgccaagtcggtgaaggaaggccaggacttcttcccgctgacc
gtgcactatcaggaaaagttttccgcagctggccgcatccccggtggcttcttcaagcgt
gaacgcggcgccaccgaaaaggaaacgctggtctcgcgcctgatcgaccgtccggtgcgc
ccgctgttccccgaaggtttctacaacgaaatcaacgtcatctgccaggtgatgagctat
gacggcgagaccgaacccgatatcgtcgcgctggttgccgcctcggccgcgctgaccatc
tcgggcgtgccgttcatgggcccgatcggcgctgcgcgcgtcggcttcaaggatggcgaa
taccagctcaacccgtcgctgtccgaagctgcctctggccgcctcgacctggtggtcgcc
gcaaccgatgctgccgtgatgatggtggaatcggaagccaaggagctgaccgaagaggaa
atgctcggcgcggtggtctttgcccacaacgaaagccgcaaggtaatcggcgcgatcatc
gagctggccgaaaaggccgccaaggatccttgggaaatcgacctgtcggacaacaccgcc
gacatcaaggccaagctcaagaagggcgttggcgccgatatcgcggcggcttacaagctg
accgacaagtcggcccgttcgaacgccctgaacgacgtgcgcgccaaggccaagacgctg
tttgcggatgaaaccccgcagacgcagatggtggcgatcaagacgctcaagaagctggaa
gccgaaatcgtgcgcggcgccatcatcaaggatggccagcgtatcgacggccgcaccgtc
acccaggttcgcccgatcgaatcgatcgttggcttcctgccgcgcacccacggttcgtcg
ctgttcacccgcggcgaaacccaggccatctgcaccaccacccttggcaccaaggatgca
gagcagatgatcgacgggctcgacggcctgagctatcagcgcttcatgctgcactacaac
ttccccccctattcggtgggtgaagtgggccgctttggcgcccccggtcgccgcgaagtg
ggccatggcaagctggcctggcgcgcgctcaacccggtgctgccgaccaaggacgagttc
ccctacacgatccgcgtactgtccgacattaccgaatccaacggctcttcgtcgatggcc
acggtgtgcggcggctgcttgtcgatgatggacgctggcgttcccatcgcgcgcccggtt
tcgggcatcgccatgggcctgatcctggaaggcaaggactttgccgtcctgtccgacatc
ctgggtgatgaagatcacctgggcgacatggacttcaaggtggccggcaccagcgaaggc
atcacctcgctgcagatggacatcaagatcgccgggatcaccgaggaaatcatgcgcaag
gccctggcccaggccaaggaaggccgcgcgcacattctgggtgaaatgaccaaggcgctg
ggttcggctcgtaacgagctgtcggcccatgctccgcgcatcgagacgctccagatcgac
aagtcgaagatccgcgaagtgatcggcaccggcggcaaggtcatccgcgaaatcgtcgcg
gaaaccggtgccaaggtcgacatcgatgacgaaggcctgatcaagatctcgtcgtccgat
ctctcgcagatcgaagcggccaagaactggattctcggcatcgtcgaagaaccggaagtc
ggcaaggtctacaacggcaaggtcgtcaacatcgtcgatttcggtgctttcgtgaacttc
atgggcggcaaggacggtctcgtccacgtgtcggaaatgaagaacgagcgcgtggaaaag
cccggcgacgtcgtcaaggaaggccaggaagtcaaggtcaaggtcctcgagatcgacaac
cgtggcaaggtgcgcctgtcgatgcgcgtagtggaccaggaaactggcgaagcgctggaa
gatacccgcccggcgcgcgaaccgcgtgaaccgcgcggtgatcgtggcgaccgcggtgat
cgcggtggtgaccgtcgtggcccgcgcagcgatcgtggcccgcgccgcgatggcgatcgt
ggtccgcgtcgcgaaggtggcgatcgcccccgtcgtgaccgcgacgaaggcccggctccc
gatcacatgccggcgttcctcaagtctgacgactga
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