KEGG   Novosphingobium capsulatum: U0041_11695
Entry
U0041_11695       CDS       T10206                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
ncp  Novosphingobium capsulatum
Pathway
ncp02024  Quorum sensing
ncp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ncp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    U0041_11695 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    U0041_11695 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ncp03019]
    U0041_11695 (hfq)
   03036 Chromosome and associated proteins [BR:ncp03036]
    U0041_11695 (hfq)
Messenger RNA biogenesis [BR:ncp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     U0041_11695 (hfq)
Chromosome and associated proteins [BR:ncp03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    U0041_11695 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1
Other DBs
NCBI-ProteinID: WQD91676
LinkDB
Position
2568161..2568751
AA seq 196 aa
MTGKTLSARPRAKSEAAAPAEAAAPATTPAPVASGGAVKGQNLQDVFLNHLRKNKIPVTM
FLVKGVKLQGIVTWFDNFSILLRRDGQSQLVYKHAISTIMPGQQLSVAHFQSGNDENGKK
RLLQEVFLSSVRDAGVQVTMFLVNGVMLQGKVAAYDLFCMLLEREGYVQLAYKHAVSTIQ
PAGHVDLTGDWEGEAN
NT seq 591 nt   +upstreamnt  +downstreamnt
atgaccggaaagaccctgtctgcgcgtccccgcgccaagtctgaagccgcagcccctgcc
gaggccgctgcgcctgcgacgacgcccgcacctgtcgccagcggaggcgcggtgaagggg
cagaaccttcaggacgtgttcctcaaccatctgcgcaagaataagattcctgtcaccatg
tttctggtgaagggcgtcaagctgcaaggcatcgtcacctggtttgacaatttctcgatc
ctgctgcgccgcgatggtcagtcgcagctggtctacaagcatgcgatctccacgatcatg
ccgggccagcagctttcggttgcccacttccagagcggcaacgacgaaaacggcaagaag
cgcctgttgcaggaagtgttcctgtcgagcgtgcgcgatgccggcgtgcaggttaccatg
ttcctcgtcaacggcgtcatgctgcagggcaaggtcgcggcctacgaccttttttgcatg
ctgctggaacgcgaaggctatgtgcagcttgcctataagcatgccgtctcgacgattcag
ccggccggccatgtcgatctgacgggtgactgggaaggcgaagcgaactga

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