Novosphingobium capsulatum: U0041_12680
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Entry
U0041_12680 CDS
T10206
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ncp Novosphingobium capsulatum
Pathway
ncp03030
DNA replication
ncp03430
Mismatch repair
ncp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ncp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
U0041_12680 (dnaE)
03430 Mismatch repair
U0041_12680 (dnaE)
03440 Homologous recombination
U0041_12680 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncp03032
]
U0041_12680 (dnaE)
03400 DNA repair and recombination proteins [BR:
ncp03400
]
U0041_12680 (dnaE)
Enzymes [BR:
ncp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
U0041_12680 (dnaE)
DNA replication proteins [BR:
ncp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
U0041_12680 (dnaE)
DNA repair and recombination proteins [BR:
ncp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
U0041_12680 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
HHH_3
COE1_HLH
Motif
Other DBs
NCBI-ProteinID:
WQD91852
LinkDB
All DBs
Position
complement(2784695..2788288)
Genome browser
AA seq
1197 aa
AA seq
DB search
MAFAPFVPLRVFSSYTMLDGAIDPKAIAKTAEKRGFPAIAITDRNGLYGSAAFAKACKDG
GVQPIIGTMLAVARPEREGASSPGFGPQAPTIDWLALYAQDSRGYDNICHLVSRAHLDRP
LEHAPHVLLSDLEGYTDSLICLTAAGEGALVRLLAGEQQSAAEAYCTRLQALFPDRLYIE
VARRNEANEQAAEEALIALAYARDLPLVATNPACFADAQFYDAHDAMLCIASSTHVDSPD
RPRSSAQWWIKPIEAMQELFADLPEALANTLVVAQRTACIPPKRKPILPSLAGDKEGEAL
ACARDSRTGLVERLKPYYPEHCHAELSQVLCLEPEAEPDGADYPELVAAGVWDEVLEYRK
RLEFEVSIINRMGFGGYFLIVADFIKWAKDHDIPVGPGRGSGAGSLVAWALTITDLDPIK
LGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQAKYGADHVAQIITFGKLKARAVLR
DTGRILQMSYGQTDRLCKMVPNHPTDPWTLERALNGVMELKREYDRDPEVKRLIDLARQL
EGLPRNSSTHAAGVVIGDRPLAKLVPLYRDPRSDMPVTQFDMKHVEDAGLVKFDFLGLKT
LSVLRKAVDLLAKRSITIDLSLLPLDDAAVYRLLQVGDTVGVFQLESEGMRRTLAAVKPT
NFGDIIALVSLYRPGPMDNIPLFGRRKNGLEAIEYPHEKLSGILAETYGIFVYQEQVMQA
AQILAGYSLGDADLLRRAMGKKIQAEMDQQRLRFVAGCKEVSQIEAGKANELFDLIDKFA
GYGFNKSHAAAYALLAYHTAWFKAHYPHEFYAASMCFDMHQSEKLNIFVDDMRRNGVALA
GPDINHSEAEFTVERTADGHAVRYALAGLRNVGEKAMDAIVAEREASGPFASLDDLFKRI
PAGSMNRRQLEALAAAGALDGLEPNRAKIIANAELLMAVADEAVRSRTSGQGGLFGGDGH
DQPATRLAETKPWSRADQMAAERENFGFYFAAHPVEEYRAVASANGARTYGSLMAGSGDG
GGAARSAAVMAALVENVQKRKTKRGKDFVMADFSDSSGLFSASCFEETLVDDFVAWAREG
TCVLLNVELDRPNPDEPPRVTVRGARPLSSVTSAARMHLTLDVTREDALRELALLLPREP
DGKGEVIARLRTASGAEPRVRLGRNFKLDSDLIERLMPIEGLANMALTAKADLRLVK
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atggccttcgcacccttcgttccgctgcgcgtcttttcgtcgtacaccatgctggacggg
gcgatcgaccccaaggcgattgccaagaccgcagaaaagcgcggcttcccggccatcgcc
attaccgaccgcaatggcctttatggcagtgctgcctttgccaaggcgtgcaaggacggc
ggcgtccagccgatcatcggcaccatgctggccgttgctcggcccgaacgcgagggggca
tctagccccggctttggcccgcaggcgccgacgatcgattggctggcgctctacgcccag
gattcgcgcggctatgacaatatctgccatctggtcagccgagcccacctcgatcgcccg
ctggagcatgcaccgcacgtgctgctgtccgatctggaaggctataccgacagcctgatc
tgcctgacagcagcgggtgagggggcgctggtgcgcctgctggccggcgaacagcagtct
gcggccgaagcctattgcacgcggttgcaggcgctgtttcccgatcggctctatatcgaa
gtggcacgccgcaacgaggccaacgagcaggccgccgaagaggcgctgatcgcgctggcc
tatgcccgcgatctgccgctggtggcgacgaacccggcctgctttgccgacgcgcagttc
tatgatgcgcacgatgccatgctgtgcatcgccagttccacccatgtcgacagcccggac
cggccgcgctcctcggcgcaatggtggatcaagccgatcgaggcgatgcaggagctgttt
gccgacctgcccgaggcattggccaataccctggtggtggcgcagcgcaccgcctgcatc
ccgcccaagcgcaagccgatcctgcctagcctggcgggcgacaaggaaggggaagcgctg
gcctgcgcgcgcgacagccgcactggcctggtcgagcggctcaagccctattacccggaa
cactgccacgccgaactgtcgcaagtcctgtgccttgagccggaggcagaaccggacggc
gcagactatcccgaactcgtggctgcgggcgtgtgggacgaggtgctggaataccgcaag
cggttggagttcgaggtttcgatcatcaaccgcatgggctttggcggctacttcctgatc
gtggccgacttcatcaagtgggccaaggatcatgacattccggtggggccggggcgtggt
tcgggtgccggttcgctggtcgcctgggcgctgaccattaccgatctcgatccgatcaag
ctgggcctgctgttcgaacgcttcctcaacccggaacgcgtttccatgcccgacttcgat
atcgacttctgcgaaacccggcgtggcgaagtgatccgctatgtccaagccaagtatggc
gccgatcacgtggcgcagatcattacgttcggtaagctgaaagcccgcgccgtgctgcgc
gataccgggcgcatcctgcagatgagctatggccagaccgaccggctgtgcaagatggtg
cccaaccatcccaccgatccctggacgctggagcgtgcactcaatggcgtgatggaactg
aagcgcgagtacgatcgcgatcccgaggtcaagcgcctgatcgacctggcgcgccagctg
gaaggcctgccgcgcaacagctctacccacgcggcgggcgtggtgatcggggaccggccg
ctggcgaaactggtgccgctctatcgcgatcctcggtcagacatgccggtgacccagttc
gacatgaagcatgtcgaggacgcagggctggtcaagttcgacttcctcggcctcaagacc
ctgtcggtgctgcgcaaggcggtggacctgctggccaagcgcagcatcaccatcgatctg
tcgctgctgccgctcgatgatgcggcggtctatcgcctgctccaggtgggtgacacggtc
ggcgtgttccagctggaatcggaaggcatgcggcgcaccctggcggcggtgaagcccacc
aatttcggtgacatcatcgcgctcgtctcgctctatcgccctggcccgatggacaacatt
cccttgttcggccgccgcaagaatggcctggaagcgattgaatatccgcatgaaaagctg
tcggggattctggccgaaacctatggcatcttcgtttaccaggaacaggtgatgcaggcc
gcgcagatcctggcgggctattcgctgggcgacgctgacttgctgcgccgcgccatgggc
aagaagatccaggcggaaatggaccagcagcgcctgcgcttcgtggccgggtgcaaggag
gtgtcgcagatcgaggcaggcaaggccaacgaactgttcgacttgatcgacaagttcgcc
ggctatggcttcaacaagagccatgctgccgcctatgccttgctggcctatcacaccgct
tggttcaaggcgcattacccgcacgaattctatgccgcgtcgatgtgcttcgacatgcac
cagtcggaaaagctcaacatctttgtcgacgacatgcgccgcaacggcgtggcgctggcg
gggcctgacatcaaccattccgaagccgaattcaccgtggagcggaccgccgatggccac
gccgtgcgctatgccctggctggcctgcgcaacgtgggggaaaaggcgatggacgcgatc
gtcgcggagcgggaggcgagtggcccgttcgcctcgctcgacgatctgttcaagcgcatt
cccgctggctcgatgaaccggcgccagcttgaagccttggcggcggccggcgcgctcgat
gggttggagcctaatcgggccaagatcattgccaacgccgaactactgatggccgtggcc
gatgaagcggtgcgcagccgcacctctggccagggcggcctgttcggcggcgacgggcat
gatcagccggccacgcggctggcggaaaccaagccatggagccgcgccgatcagatggcg
gccgagcgcgagaacttcggcttctatttcgccgcgcacccggtggaggaataccgcgcc
gtggcgagcgccaatggcgcgcgcacctatggcagcctgatggcgggttctggtgatggt
ggtggcgccgcgcgatcggcggcggtcatggcggcgctggtggaaaacgtccagaagcgc
aagaccaagcgcggcaaggactttgtcatggccgacttttccgacagcagcgggctgttt
tcggcctcgtgctttgaagaaaccctggtcgacgatttcgtcgcctgggcgcgcgaaggc
acctgcgtgctgctcaatgtcgaactcgatcggcccaaccctgacgagccgccacgcgtg
accgtgcgcggcgcccgcccgctgtcgagcgtgaccagcgcggcgcgcatgcacctgacg
ctggacgtgacacgcgaggatgccctgcgcgaactggcgctgctcttgccgcgcgagccc
gatggcaagggcgaggtgatcgcccggctgcgcaccgcaagcggggccgagccgcgcgtg
cggctggggcgcaatttcaagctcgacagcgatttgatcgaacggctgatgccgatcgaa
gggctggccaacatggcgctgacggccaaggccgacctgcggctggtgaaataa
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