Novosphingobium capsulatum: U0041_14060
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Entry
U0041_14060 CDS
T10206
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ncp Novosphingobium capsulatum
Pathway
ncp02040
Flagellar assembly
Brite
Transcription machinery [BR:
ncp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
U0041_14060 (rpoD)
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Gene cluster
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NCBI-ProteinID:
WQD92109
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Position
3089115..3091115
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AA seq
666 aa
AA seq
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MASNDKTDSGDAPLIDLNEASIKKLIARAKRRGVITYDELNEALPQDQMSSEQIEDIMAA
ISEMGVNIVESDEDAVDPEEREAEEAEDNDTGMDDRPVVEKRKETIERTDDPVRMYLREM
GAVELLSREGEIAIAKRIEAGRDTMIMGLCESPITFHAIIQWSEALNAGEMQLREILDLD
AMLSKEPQPENLSEDGEEADGEISEATAGPSFKEEEDVEEEETEDEDDELRERRARPAEE
EEEDNTLSLAQMEATLKPAALERFAEITSLFRAFEKLQGERLDALGLGLPFSAAKETEYH
KLREELTAQVESVQFHASKIEYLVDNLYAFNRRLTTLGGQMLRLAERHKVSRKDFLDHYV
GRELDEGWLQSLATRDKKWAAFAATEAGAVERIRAEVADIASATGMQLAEFRRIVNMVQK
GEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF
STYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERL
SMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKM
RSFLDQ
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggcttccaacgacaagaccgatagcggcgatgcaccgctgatcgaccttaacgaggct
tcgatcaagaagctgatcgcgcgcgccaagcgtcgcggcgtcatcacgtatgacgagctg
aacgaagctttgccgcaagaccagatgtcctccgagcagatcgaggacatcatggccgcg
atctcggaaatgggcgtcaacatcgtcgagagcgacgaggacgcggtcgatcccgaagag
cgcgaggctgaggaagccgaagacaacgacaccgggatggacgaccgcccggtagttgaa
aagcgcaaggaaaccatcgaacgcaccgacgatccggtgcgcatgtacctgcgcgaaatg
ggcgcggtggaactgctcagccgcgagggcgaaatcgccattgcgaagcgcatcgaagcc
ggccgcgacaccatgatcatgggcctgtgcgaaagcccgattaccttccacgccatcatc
cagtggtccgaagcgctcaacgcgggcgaaatgcagctgcgcgagattctcgatctcgat
gccatgctgtccaaggaaccgcagcccgagaacctgtccgaagacggcgaggaagccgac
ggcgaaatcagcgaggccaccgctggcccttccttcaaggaagaggaagacgtcgaggaa
gaggaaaccgaggacgaggacgacgagctgcgcgagcgccgcgcccgtccggcggaagag
gaagaggaagacaacaccctttccctcgcccagatggaagccacgctcaagcctgccgcg
ctggagcgttttgccgaaatcaccagcctgttccgcgcctttgaaaagctccagggcgag
cgtcttgacgcgctgggcctgggcctgccgttctcggccgccaaggaaaccgaatatcac
aagctgcgcgaggaactgaccgcgcaggtggaaagcgtgcagttccacgcttccaagatc
gaatacctggtcgacaacctctatgcgttcaaccgccggctgaccacgctgggcgggcag
atgctgcgcctggccgagcgccacaaggtgagccgcaaggacttcctcgatcactacgtc
gggcgcgagctggacgaaggctggttgcagtcgctcgccacgcgcgacaagaagtgggcg
gcctttgccgccaccgaagcgggcgcggtcgaacgcatccgcgccgaagtggccgacatt
gcctcggccacgggcatgcagctggccgagttccgccgcatcgtgaacatggtccagaag
ggtgagcgcgaggcgcgcatcgccaagaaggaaatggtcgaagcgaacctgcgcctcgtg
atctcgatcgccaagaagtacaccaaccgcggcctgcagttcctggacctcatccaggaa
ggcaatatcggcctgatgaaggcggtggacaagttcgagtaccgccgcggctacaagttc
agcacctatgccacctggtggatccgccaggcgatcacccgctcgatcgccgaccaggcg
cgcaccatccgcattccggtgcacatgatcgagacgatcaacaagctggttcgcaccagc
cgccagttcctgcacgagcagggccgcgagcccacgcccgaggaaatggccgagcgcctg
tcgatgccgctcgaaaaggtgcgcaaggtgatgaagatcgccaaggagccgatcagcctc
gaaacgccgatcggcgacgaggaagattcgcacctgggcgatttcatcgaggacaagaac
gcgatcatcccggtggatgcggccatccaggccaatctcaaggaaaccgtcacccgcgtt
ctggccagcctgaccccgcgcgaggaacgcgtgctgcgcatgcggttcggcatcggcatg
aacaccgatcacacgctggaagaagttggccagcagttctcggtgacgcgcgaacgcatt
cgtcagatcgaagccaaggcgctgcgcaagctcaagcacccgagccgcagccgcaagatg
cgctcgttcctcgatcagtaa
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