Novosphingobium capsulatum: U0041_14445
Help
Entry
U0041_14445 CDS
T10206
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ncp Novosphingobium capsulatum
Pathway
ncp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U0041_14445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncp03019
]
U0041_14445
03009 Ribosome biogenesis [BR:
ncp03009
]
U0041_14445
Enzymes [BR:
ncp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
U0041_14445
Messenger RNA biogenesis [BR:
ncp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
U0041_14445
Ribosome biogenesis [BR:
ncp03009
]
Prokaryotic type
rRNA processing factors
U0041_14445
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
WQD92181
LinkDB
All DBs
Position
3165073..3167913
Genome browser
AA seq
946 aa
AA seq
DB search
MTQRMLIDARHQEETRVAVLKGNRIEEFDFESADHKQIKGNIYLAKVTRVEPSLQAAFVD
FGGNRHGFLAFSEIHPDYYQIPKEDREALLAEEAAHAEEEAALRAAEDGDDEDYEGGADY
EGGYDDGNFEDGQGVTEVDTSEKDQVATIEGGVVENGFDHEAEDAADGEESHSDNGRRQR
RPRRQGRGQSKEAEELRAKRMALRRRYKIQDVIQRRQVLLVQVVKEERGNKGAALTTYLS
LAGRYCVLMPNSSHGGGISRKISSASDRKRLKQIIAEMELPRSMSCIVRTAGLQRTKPEI
KRDFDYLARLWDEIRERTMHSSAPALIHSDSDLIKRAIRDIYNRDIEEVVVEGEAGYRAA
KDFMKLLMPSHAKRVRQYADPVPLFQRYGAEDQLSAMYDPVVQLRSGGYLVINPTEALVS
IDINSGRSTKEHGIEQTAVATNLEAAREIARQLRLRDMAGLVVIDFIDMEYGSNVRKVEK
AMKDALKDDRARIQVGRISGFGLMEMSRQRLRTGVLEATTRACPHCDGSGLVRTASSAGL
SALRMIEDEAAKGKGSIITLYASQEAAIYVLNTKRTDLAEIEMRYGVAVEVIPEGENEGA
KMRVASRGPKPEFVPRFEPIVEPEEDDVIEDTYEDEEDVVEERSEREESRGEGRGEADSN
GRRKRRKRRRGRNRDRRDETSGEAGDEHDTDEAEGSDAEDAAYDVVEAASDAGDEDGAPE
GQAEADDDRGPRKRRRRSRRRRGGQRDDAAEAQGEDGETADAEPVIADAPAAEPAPVAAA
AAAEPAVAADVEAPAEEAPAKPKRVRKKKVVEAPAEAAAEPAPAVEAPAAEAPAAEAPAK
PKRVRKKKVADAPAEAAAEPATAAQAPAAEAPAAEAPAKPKRVRKKKVAEAPAEASVDAA
PEVAPAAAAPADADAAGESDTGEQPAADGEDGASPRRGWWQRTFGA
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atgacccagcgcatgctgatcgatgcgcgccaccaggaagaaacccgggtggctgtgctc
aagggcaatcgtattgaagaattcgactttgaatctgctgatcacaagcagatcaagggc
aatatctacctcgccaaggttacccgcgtagagccttcgctccaggcggcctttgtcgac
tttggcggcaaccgccacggcttcctggcgttcagcgaaatccacccggattactaccag
atccccaaggaagatcgcgaagcgctgctggccgaagaggccgcccacgccgaggaagaa
gccgccctgcgcgctgccgaagatggcgacgacgaggattatgaaggcggcgccgactac
gaaggcggctacgacgacggcaacttcgaagacggccagggcgtgaccgaggtcgatacc
tcggaaaaggaccaggtcgccacgatcgaaggcggcgtagtcgaaaacggctttgaccat
gaagccgaagacgccgccgatggcgaagaatcgcacagcgacaacggccgccgccagcgc
cgtccgcgccgccagggccgtggccagagcaaggaagccgaagagctgcgcgccaagcgc
atggccctgcgccgccgctacaagatccaggacgtgatccagcgccgccaggtgctgctg
gtccaggtcgtcaaggaagaacgcggcaacaagggtgcagcgctcaccacctatctcagc
ctggcgggccgctattgcgtgctcatgcccaattccagccacggtggcggcatcagccgc
aagatcagctcggcctctgaccgcaagcgcctgaagcagatcatcgccgaaatggaactg
ccccgctcgatgagctgcatcgtccgtaccgccggcctgcagcgcaccaagcccgagatc
aagcgcgatttcgactatctcgcccgcctgtgggacgagattcgcgagcgcacgatgcac
tcttcggccccggcgctgatccattccgacagcgacctgatcaagcgcgccatccgcgac
atctacaaccgcgatatcgaggaagtggtcgtcgagggcgaagcgggctaccgcgccgcc
aaggacttcatgaagctgctgatgcccagccacgccaagcgggtgcgccagtatgccgat
ccggtgccgctgttccagcgctatggcgccgaagaccagctttcggcgatgtatgatccc
gtggttcagctgcgttcgggtggctacctggtgatcaacccgaccgaggcgctcgtctcg
atcgacatcaactcgggccgctccaccaaggaacacggcatcgagcagaccgccgttgcc
accaacctggaagccgcgcgcgaaattgcccgccagttgcgcctgcgcgacatggccggc
ctggtcgtcatcgacttcatcgacatggaatacggatcgaacgtccgcaaggtcgagaag
gcgatgaaggacgccttgaaggacgaccgcgcgcgcatccaggtgggtcgcatttccggc
ttcggcctgatggaaatgagccgccagcgcctgcgcaccggcgtgctcgaagccaccacc
cgcgcctgcccgcactgcgatggttcgggcctggtgcgcaccgcctcgtccgccggcctt
tcggccctgcgcatgatcgaggatgaagccgccaagggcaaaggcagcatcatcacgctc
tacgccagccaggaagcggcgatctacgtgctcaacaccaagcgcaccgatcttgccgag
atcgaaatgcgctatggcgtggccgtggaagtgatccccgagggcgagaatgaaggcgcc
aagatgcgcgttgcctcgcgcgggcccaagcctgaattcgtgccgcgcttcgaacccatc
gtcgaacctgaagaagacgacgtgatcgaggacacctacgaggacgaggaagacgtcgtc
gaggaacgcagcgagcgcgaggaaagccgtggcgaaggcaggggcgaagccgacagcaat
ggccgtcgcaagcgccgcaagcgccgtcgtggccgcaaccgcgatcgccgtgacgaaacc
tcgggcgaagccggtgacgagcatgacaccgacgaagccgaaggcagcgatgctgaagac
gcggcctacgatgtggtggaagccgcatctgatgctggcgacgaggacggcgctcccgaa
ggccaggccgaagccgacgatgaccgtggcccgcgcaagcgccgccgccgcagccgccgc
cgtcgcggtggccagcgcgatgacgctgccgaggcccagggcgaagacggtgagaccgcc
gacgccgagccggtgatcgctgacgcccccgctgccgaaccggccccggtggcagcagcc
gctgccgctgaaccggccgtggcagcagacgtcgaagcgcccgccgaggaagccccggcc
aagcccaagcgcgtccgcaagaagaaggtggtagaggctcctgccgaagccgccgccgag
ccggcacctgccgtcgaagcgcctgctgcagaggctccggctgccgaagcgcctgccaag
cccaagcgcgtgcgcaagaagaaggtcgccgacgctccggccgaagcggccgccgaaccg
gccaccgccgcgcaagcgcctgctgccgaggctccggctgccgaagcgcctgccaagccc
aagcgcgtgcgcaagaagaaggttgctgaagcacccgcggaagcaagcgtggacgctgcc
cccgaagtggcacccgctgcggctgcgccggcagatgctgacgcggctggcgaaagcgat
accggcgaacagcccgcagccgatggcgaagacggcgcttcgccgcgccgtggctggtgg
cagcgcaccttcggcgcctga
DBGET
integrated database retrieval system
