Novosphingobium capsulatum: U0041_15310
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Entry
U0041_15310 CDS
T10206
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ncp Novosphingobium capsulatum
Pathway
ncp03420
Nucleotide excision repair
ncp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ncp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
U0041_15310
03430 Mismatch repair
U0041_15310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncp03400
]
U0041_15310
Enzymes [BR:
ncp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U0041_15310
DNA repair and recombination proteins [BR:
ncp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
U0041_15310
MMR (mismatch excision repair)
Other MMR factors
U0041_15310
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
PcrA_UvrD_tudor
AAA_12
DUF3253
AAA_11
DEAD
Motif
Other DBs
NCBI-ProteinID:
WQD92346
LinkDB
All DBs
Position
3377751..3380120
Genome browser
AA seq
789 aa
AA seq
DB search
MGKSALRLRTRFPTCSTVTSFSPPSPHSPSGPLAGNEPDWLSGLNPPQREAVLTTDGPVL
MLAGAGTGKTAALTARLANLLRQRLAYPSQILCVTFTNKAAREMRERVGHLIGPAVEGMP
WLGTFHSIAAKMLRRHAELVGLTSSFTIIDTDDQLRLLKQLIQAEGVDDKRWPAKQLAGL
IDRWKNRGLGPADLDAGENEAYANGRGAHFYRLYQDRLRTINACDFGDLLLHILVIFRQH
RDVLESWQDRFRYIMVDEYQDTNAVQYLWLRLLAQVRKNICVVGDDDQSIYSWRGAEVAN
ILRFEKDFPGAKVIRLEQNYRSTPHILGAASGLIAENAQRLGKQLWTERDGGDKLRVIGV
WDAPEEARRVGEEIERLEREGCPLDRVAILVRAQFQTREFEDRFIQIGLAYRIVGGFRFY
ERAEIRDALAYLRLVGQPSDDLAFERIYNTPKRGLGDKTLEKLFRFARANQVPLLRAGYD
ITDTDELPARARNTLAALVRDFLRWREQVATLSPAELARTILDESGYTAALQAEKTAEAN
GRLENLSELVRAMEEYETLGDFLEHVSLVMDNEAQANEDKVTIMTIHAAKGLEFDQVFLP
GWEEGVFPSQRALDEGGLASLEEERRLAYVAITRARRRCTILNAANRRIYGQWTSAIPSR
FIEELPEDHIEQETTLSGGASMWRANWSEASDPFADVARNHPAKASTRGPGWQRAAAQMF
DPKPRKIAENTRSAASFASKPRADLAVGARVFHDKFGYGTISSQEGNKLEIQFDSAGEKR
VLDSFVKPA
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatccgccttgcgcctgcgcacccggttccctacttgttccaccgtgacgagc
ttttcccccccttctccccactctccctccggcccccttgcaggcaacgagcccgattgg
ctgtcgggcctgaacccgccgcagcgcgaggcggtgttgaccaccgatggccctgtgctg
atgctggcgggtgccggcaccggcaagaccgccgcgctgaccgcgcgcctggccaatctg
ctgcgccaacgcctggcttatccgtcgcagatcctgtgcgtgacattcaccaacaaggcc
gcgcgcgaaatgcgcgagcgcgtggggcacctgatcggccccgccgtggaaggtatgccc
tggctcggcacgttccattcgatcgcggccaagatgctgcgccgccatgccgagctggtc
gggctgaccagctcgttcacgatcatcgataccgatgaccagttgcgcctgctcaagcag
ctgatccaggccgaaggcgtggatgacaagcgctggccggccaagcagctcgccgggctg
atcgatcgctggaagaaccgtgggcttggcccggccgatctcgatgccggggaaaacgaa
gcctatgccaatggccgtggcgcgcatttctaccggctctatcaagaccgcctgcgcacc
atcaatgcctgcgatttcggcgatctgctgctgcatatcctggtgatcttccgccagcac
cgcgatgtgctggaaagctggcaggatcgcttccgctatatcatggtggacgaataccag
gacaccaacgcggtgcagtacctatggctgcggctcttggcacaagtgcgcaagaacatc
tgcgtggtgggtgatgatgaccagtcgatctattcctggcgcggcgcggaagtggcgaac
atcctgcgctttgaaaaggattttcccggcgccaaggtgatccggctggagcagaactat
cgctccaccccgcatatcctgggcgcggcatcgggcctgatcgccgaaaatgcgcagcga
ctaggcaagcagctgtggaccgagcgcgacggcggcgacaagctgcgcgtgatcggcgtg
tgggacgcgcccgaggaagcgcgccgcgtgggcgaggagatcgagcggctggagcgcgaa
ggctgcccgctcgaccgcgtggcgatcctggtgcgcgcgcagttccagacgcgcgagttc
gaagaccgcttcatccagatcggcctcgcctatcgcattgtcggcggcttccgcttttac
gagcgcgccgaaatccgcgatgcgctggcctacctgcgcctggtgggccaaccgtcagac
gatctggcgttcgagcggatctacaatacgcccaagcgcggcctgggcgacaagacgctg
gaaaagctgttccgctttgcccgtgccaaccaggtgccgctgctgcgcgccggctatgac
attaccgataccgacgaattgcccgcccgcgcgcgcaacacgctggccgcgctggtgcgc
gattttctgcgctggcgcgaacaggtcgccacgctctcgccggccgaactggcgcgcacg
atcctcgatgaaagcggctataccgccgcacttcaggccgaaaagaccgccgaggccaat
ggccgcctggaaaacctctcggaactcgtccgcgcgatggaagagtatgagacgctgggc
gatttcctggaacacgtaagcctggtgatggacaacgaggcccaggccaacgaggacaag
gtcacgatcatgaccatccacgccgccaagggcctagagtttgaccaggtgttcctgccg
ggctgggaagaaggggtgttcccctcgcagcgcgcgctcgacgaaggcggccttgccagc
ctggaggaagagcgccgcctggcctatgtggcgatcacccgcgcgcggcggcgctgcacc
atcctcaatgccgccaaccgccgcatctatggccagtggaccagcgccatcccctcgcgc
tttatcgaggaactgcccgaggaccacatcgagcaggaaaccaccctgtcgggcggggca
tcgatgtggcgcgccaactggagcgaggcgagcgatccctttgccgatgtggcgcgcaat
caccccgccaaggccagcacgcgcggccccggctggcagcgcgccgcggcgcagatgttc
gatcccaagccgcgcaagattgcagaaaacacacgcagcgcagccagctttgccagcaag
ccacgcgccgatctggcggtgggcgcgcgggtgtttcacgacaaattcgggtatggcacc
atttccagccaggaaggcaacaagctggaaatccagttcgacagcgccggtgaaaagcgc
gtgctcgacagcttcgtgaaaccggcctga
DBGET
integrated database retrieval system
