Novosphingobium capsulatum: U0041_16120
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Entry
U0041_16120 CDS
T10206
Symbol
ffh
Name
(GenBank) signal recognition particle protein
KO
K03106
signal recognition particle subunit SRP54 [EC:
3.6.5.4
]
Organism
ncp Novosphingobium capsulatum
Pathway
ncp02024
Quorum sensing
ncp03060
Protein export
ncp03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
ncp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03060 Protein export
U0041_16120 (ffh)
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
U0041_16120 (ffh)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
U0041_16120 (ffh)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
ncp02044
]
U0041_16120 (ffh)
Enzymes [BR:
ncp01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.5 Acting on GTP to facilitate cellular and subcellular movement
3.6.5.4 signal-recognition-particle GTPase
U0041_16120 (ffh)
Secretion system [BR:
ncp02044
]
Sec (secretion) system
Prokaryotic Sec-SRP core components
U0041_16120 (ffh)
Eukaryotic Sec-SRP protein
U0041_16120 (ffh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SRP54
SRP_SPB
SRP54_N
CbiA
AAA_22
AAA_30
Zeta_toxin
AAA_19
AAA_33
AAA_31
6PF2K
Motif
Other DBs
NCBI-ProteinID:
WQD92498
LinkDB
All DBs
Position
complement(3545404..3546915)
Genome browser
AA seq
503 aa
AA seq
DB search
MFDSLSDRLGGVFDRLRGRGALSEDDVRAAMREVRIALLEADVALPVVRRFIDRVTEEAV
GQSVLKSVTPGQQVVKIVNDALVEMLGSEAADLDLAAAPPVVIMMVGLQGSGKTTSTAKI
GKLLKEKRGKKVMMASLDVNRPAAQEQLRVLGEQAGVATLPIVPGQSPVEIATRALHSAK
LQAVDVLLLDTAGRLHVDQALMDEMKAVAAISVPKETLLVVDSLTGQDAVNVAQAFAGEV
DLTGVVLTRMDGDARGGAALSMRAVTGKPIKFAATGEKLDAIEPFQPERVAGRILGMGDI
VSIVEKAAATIKQDEAEKLAARMAKGQFDMNDLRMQLQQMQRMGGLGALAGLMPGMKKAK
AAMAQSGMDDKVLLHMDAIIGSMTAKERTKPELLNAKRKIRVAKGSGTTVQDVNKLLKMH
MEMAKAMKQIKKMGGLKGLGALFGKGGLGAAMPGLDQQAGPGGLGGGMGGGLGGMGGGGG
LPGLPGMGSGGLPSNLADLLKKK
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
gtgttcgacagtctttccgaccggcttggcggtgtattcgaccgcctgcgcgggcgcggc
gcgctttccgaggacgatgttcgcgccgccatgcgcgaagtgcgcatcgccctgctggag
gccgacgtggccttgccggtggtgcgccgcttcatcgatcgcgttaccgaagaagccgtt
ggccagtcggtcctgaagtcggtcacgccgggccagcaggtcgtcaagatcgtcaacgat
gccctggtcgaaatgctcggcagcgaggcagccgatctcgatctggccgccgccccgccg
gtggtgatcatgatggtcggcctgcagggttcgggcaagaccaccagcacggccaagatc
ggcaagctgctcaaggaaaagcgcggcaagaaggtgatgatggcgtcgctcgacgtcaat
cgccccgccgcccaggaacaactgcgcgtgctgggcgagcaggccggcgttgccacgctg
cccatcgtgccgggccagtcgccggtggaaatcgccacgcgcgcactgcattccgccaag
cttcaggccgtggacgtgctgctgctcgataccgccggccgtctccacgtcgaccaggcg
ctgatggacgagatgaaggccgtggccgccatctctgtgcccaaggaaacgctgctcgtc
gtcgactcgctgaccggccaggacgcggtcaacgtggcgcaggcgttcgctggcgaggtt
gacctgaccggcgtggtgctgacccgcatggatggcgatgcccgcggcggtgcggcgctg
tcgatgcgcgcggttaccggcaagccgatcaagtttgccgccaccggcgaaaagctcgac
gcgatcgaaccgttccagcccgaacgtgttgccggccgcatcctgggcatgggcgatatc
gtctcgatcgtcgaaaaggcggcggcgacgatcaagcaggacgaagctgaaaagctcgcc
gcgcgcatggccaagggccagttcgacatgaacgatctgcgcatgcagttgcagcagatg
cagcgcatgggcggcctgggcgcgctcgcgggcctgatgccgggcatgaagaaggccaag
gcggcgatggcgcagtcgggcatggacgacaaggtgctgctgcacatggatgcgatcatc
ggttcgatgacggccaaggagcgcaccaagcccgaactcttgaacgccaagcgcaagatc
cgcgtcgccaaggggtccggcaccacggtgcaggacgtcaacaagcttctgaagatgcac
atggaaatggccaaggccatgaagcagatcaagaagatgggcggcctcaagggcctgggc
gcgctgttcggcaagggtggccttggcgccgcgatgccgggccttgatcagcaggccggc
cccggtgggctcggcggcggcatgggcggcggccttggcggtatgggcggcggtggcggc
cttcccggcctgcccggcatgggcagtggcggcttgccgtcaaacctggctgacctgctc
aagaagaaatga
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