Novosphingobium capsulatum: U0041_16690
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Entry
U0041_16690 CDS
T10206
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ncp Novosphingobium capsulatum
Brite
KEGG Orthology (KO) [BR:
ncp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncp03032
]
U0041_16690
03400 DNA repair and recombination proteins [BR:
ncp03400
]
U0041_16690
Enzymes [BR:
ncp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
U0041_16690
DNA replication proteins [BR:
ncp03032
]
Prokaryotic type
DNA Topoisomerases
U0041_16690
DNA repair and recombination proteins [BR:
ncp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
U0041_16690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
DUF1684
Motif
Other DBs
NCBI-ProteinID:
WQD92604
LinkDB
All DBs
Position
complement(3643340..3644383)
Genome browser
AA seq
347 aa
AA seq
DB search
MNRKAVLQESGKSRLVYVDDSAPGITRRRAGRGWCYRDHAGQRIADRTEIDRLNAVALPP
AYRDAWFCPMPHGHILATGVDARGRKQYRYHPDFRAAREAEKFDGCAAFGALLPKIRARV
EAALSGRGLSQERCIASVVRLLDTGAIRIGNEAYARANASFGATTLRMKHVELRGQSLRL
RFRAKSGVERDMRLTDRALVRFVRRMQDLPGQHLFQYLGEDGAPCPVGSADINAWLRSVT
GAEFTAKHFRTWHASVLAFGALAHAEQNAPLKELLAQVSDRLGNTPTIARKSYIHPAVLA
LVPDQAEWRAGLRLPRARQWLSRDERGLLALLDAQPSAVSVGTSASK
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
ttgaacaggaaagccgttttgcaggaatcgggcaagagccgactggtctatgtggacgat
agtgcaccgggcatcacgcggcggcgcgcggggcgcggatggtgctatcgcgatcatgcc
gggcagcgtatcgccgaccggacagagatcgaccgcctcaatgcggtggcgctgccaccg
gcctatcgcgacgcgtggttctgcccgatgccgcatggccatatcctggcgaccggcgtc
gatgcgcgcggccgcaagcaataccgctatcaccccgatttccgcgccgcgcgcgaggcg
gaaaagtttgatggctgcgcggcattcggcgcgctgctgcccaagatccgcgcccgcgtc
gaagcagcgctatcgggccgggggctcagccaggaacgctgcatcgcctcggtggtccgc
ctgctcgacaccggtgcgattcgcatcggtaacgaggcctatgcccgcgccaatgccagc
tttggcgccacgacactgcggatgaagcatgtcgagctgcgcgggcaaagcctgcggctg
cgctttcgtgccaagtcgggcgtggagcgggacatgcgcctgaccgatcgcgccctcgtg
cgtttcgtgcggcggatgcaggacctgcccggccagcacttgttccagtacctgggcgag
gatggcgcgccatgtccggtcggctcggccgatatcaacgcctggctgcgcagcgtgacc
ggggcggaattcaccgccaagcatttccgcacctggcatgccagcgttctggcatttggc
gcgctggcccatgcagaacagaacgcgccgctcaaggaactgctggcgcaggtgtccgat
cgactgggcaatacacccacgattgcccgcaagagctacatccatcccgccgtgctggcc
ctcgtgcccgatcaggcggaatggcgcgcggggctgcgattgccccgcgctaggcaatgg
ctctcgcgcgacgagcgtgggctgctcgcgctgctcgatgctcagcccagcgccgtcagc
gttggcaccagcgcatcgaagtga
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