Nocardioides coralli: K6T13_02285
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Entry
K6T13_02285 CDS
T08149
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ncq
Nocardioides coralli
Pathway
ncq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ncq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K6T13_02285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncq03021
]
K6T13_02285
03400 DNA repair and recombination proteins [BR:
ncq03400
]
K6T13_02285
Enzymes [BR:
ncq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K6T13_02285
Transcription machinery [BR:
ncq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K6T13_02285
DNA repair and recombination proteins [BR:
ncq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K6T13_02285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QZY29545
LinkDB
All DBs
Position
457823..461701
Genome browser
AA seq
1292 aa
AA seq
DB search
MLDVNFFDQLKIGLATADEIRAWSHGEVKKPETINYRTLKPERDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEDARHRDLSSLEGKVQLERERLEKRRDGAIEDRTKKLEED
LATLEAEGAKADQRRKVRDGAEREMKQLRDKAQREIDRLDEVWDTFKSLKVQDLMGDEML
YREMKAWFGKYFEGHMGATAIQKRLESFDIEAEVEALRDVIATGKGQRKVRALKRLKVVD
AFRKTGNQPIGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVSGPQLKLHQCGLPKQMALELFKPFVMKRLVDLSHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSTNNILKPSDGRPVTMPTQDMIIGLFFLTTQREGEPGEGR
AFASTAEAVMAFDHGEISLQSKVRIRFPDLVPPLDLELGEDWEEGRSITLETTLGRALFN
DTLPADYPYVNYEVGKKALGAIVNDLAERYSKVEVAASLDALKDAGFHWATRSGVTVSID
DVTTPEDKAGILADYEKQAEKVQKQYERGLVTDDERRQELIEIWTQASNEVGKAMEGNFD
RSNPIYMMVDSGASGNMNQIRQVAAMRGLVANPKGEIIPRPIKSNFREGLTVLEYFIATH
GARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCATERGLDKVIGVKGEDGVVRKDD
NAETAAYARTAAVEVTHPDTGEALVAAGEDLGDVKIGELVAAGIETVKVRSVLTCDARTG
TCAKCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRV
VELFEARQPKGLAPITEFAGRVEIEETDKARKVLVTPDDGSEVQEYSVSKRARLLVADGD
HVEVGHQLTVGTPDPKEVLRVLGIRRAQQHLVDEVQAVYRSQGVSIHDKHIEIIVRQMLR
RVTVIESGETNLLPSDLVDRVIFEEENRRVVTEGGKPASGRAELMGITKASLATESWLSA
ASFQETTRVLTDAAINGRSDSLRGLKENVIIGKLIPAGTGLERYRNIRVEPTEEARAAAY
SVTGYDSYDYEFGGGSGQAVALDDFDFGSYQN
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgttaatttcttcgaccagctgaagatcggcctggccaccgcggacgagatc
cgcgcctggagccacggtgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagcgcgacggcctgttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgggtgcgcttcaaggggatcatctgcgagcgctgcggcgtc
gaggtgacccgctcgaaggtccgccgcgagcggatgggccacatcgagctggccgccccg
gtgacccacatctggtacttcaagggtgtgccgtcgcggctgggctacctgctggacctg
gcgccgaaggacctcgagaaggtcatctacttcgccgcctacatgatcacctccgtcgac
gaggacgcccgtcaccgcgacctgtcctcgctcgagggcaaggtgcagctggagcgcgag
cgcctcgagaagcgtcgcgacggcgcgatcgaggaccggaccaagaagctggaggaggac
ctcgcgaccctcgaggccgagggcgccaaggccgaccagcggcgcaaggtgcgtgacggc
gccgagcgggagatgaagcagctgcgcgacaaggcgcagcgcgagatcgaccgtctcgac
gaggtctgggacaccttcaagtcgctgaaggtccaggacctcatgggcgacgagatgctc
taccgcgagatgaaggcgtggttcggcaagtacttcgagggccacatgggcgccacggcg
atccagaagcgcctggagtccttcgacatcgaggccgaggtcgaggcgctgcgcgacgtc
atcgccacgggcaagggccagcgcaaggtccgtgccctcaagcggctgaaggtggtcgac
gccttccgcaagaccggcaaccagccgatcggcatggtgctcgacgccgtcccggtcatc
ccgccggacctgcggccgatggtccagctggacggtggccgcttcgcgacctccgacctc
aacgacctctaccgccgggtgatcaaccgcaacaaccgtctcaagcggctgctcgacctc
ggtgcgcccgagatcatcgtcaacaacgagaagcggatgctccaggaggccgtcgactcg
ctgttcgacaacggccgccgcggtcgtccggtcaccggcccgggcaaccggccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactccggccgttcggtgatcgtgtcgggtccgcagctgaagctgcaccag
tgcggtctgcccaagcagatggccctggagctcttcaagcccttcgtcatgaagcggctc
gtggacctgtcgcacgcccagaacatcaagtccgcgaagcggatggtggagcgtgcccgg
ccggtcgtgtgggacgtgctcgaggaggtcatcaccgagcacccggtgctgctcaaccgg
gcacccacgctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctggtctgcacggcgttcaacgccgacttcgacggtgaccag
atggcggtgcacctgccgctgtccgccgaggcgcaggccgaggcgcggatcctgatgctg
tcgacgaacaacatcctcaagccgtccgacggccggccggtcaccatgccgacgcaggac
atgatcatcggcctgttcttcctcaccacgcagcgtgagggcgagccaggcgagggccgg
gcgttcgcctcgacggccgaggccgtcatggccttcgaccacggtgagatcagcctgcag
agcaaggtcaggatccggttccccgacctggtgccgccgctcgacctcgagctgggcgag
gactgggaggagggtcgctcgatcaccctcgagacgaccctgggtcgggcgctgttcaac
gacacgctgcccgccgactacccgtacgtgaactacgaggtcggcaagaaggccctgggc
gcgatcgtcaacgacctcgccgagcgctactccaaggtcgaggtcgcggcgtccctggac
gccctcaaggacgccggtttccactgggccacccggtccggtgtgaccgtctccatcgac
gacgtcaccaccccggaggacaaggccggcatcctcgctgactacgagaagcaggccgag
aaggtccagaagcagtacgagcggggcctggtgaccgacgacgagcgccgccaggagctc
atcgagatctggacgcaggcctccaacgaggtcggcaaggccatggagggcaacttcgac
cggtcgaacccgatctacatgatggtcgactccggtgcctccggaaacatgaaccagatc
cggcaggtcgcggccatgcgtggtctggtggccaacccgaagggcgagatcatcccgcgt
ccgatcaagtccaacttccgtgagggcctcacggtgctggagtacttcatcgcgacgcac
ggcgcccggaagggtctggcggacaccgcgctgcggaccgccgactccggctacctgacc
cgtcgactggtcgacgtctcccaggacgtcatcatccgcgaggacgactgcgccaccgag
cgcggcctcgacaaggtgatcggcgtcaagggcgaggacggtgtcgtccgcaaggacgac
aacgccgagaccgcggcgtacgcccggacggcggccgtcgaggtcacccaccccgacacc
ggcgaggcgctggtggctgcgggcgaggacctcggcgacgtcaagatcggcgagctggtc
gcggccggcatcgagacggtcaaggtccgctccgtgctgacctgcgacgcccggaccggt
acctgcgccaagtgctacggccggtcgctggccaccggcaagctggtcgacatcggcgag
gccgtcggcatcatcgcggcccagtcgatcggtgagcccggcacgcagctgacgatgcgg
accttccacaccggtggtgtggcctcggccgacgacatcacgcagggtctgccccgtgtg
gtcgagctgttcgaggcccgtcagcccaagggtctggcgccgatcacggagttcgccggc
cgggtcgagatcgaggagaccgacaaggcccgcaaggtcctggtcacccccgacgacggc
tccgaggtccaggagtactccgtcagcaagcgggcccggctgctggtcgccgacggcgac
cacgtcgaggtcggccaccagctgacggtcggtacgccggacccgaaggaggtgctccgc
gtgctcggtatccgtcgggcgcagcagcacctcgtcgacgaggtccaggcggtgtaccgg
tcgcagggtgtgtcgatccacgacaagcacatcgagatcatcgtgcggcagatgctgcgc
cgcgtgacggtcatcgagtcgggtgagaccaacctgctgccctccgacctggtcgaccgg
gtgatcttcgaggaggagaaccggcgcgtggtcaccgagggtggcaagcccgcctcgggt
cgtgcggagctgatgggcatcacgaaggcgtcgttggccaccgagtcgtggctgtcggcg
gcctccttccaggagacgacccgcgtcctcaccgacgcggcgatcaacggtcgcagcgac
tcgctgcgcggcctgaaggagaacgtgatcatcggcaagctgatcccggccggcaccggc
ctggagcgctaccgcaacatccgggtcgagccgaccgaggaggctcgcgcggcggcgtac
tccgtcaccgggtacgactcctacgactacgagttcggcggcggaagcggccaggcggtc
gccctggacgacttcgacttcggttcctaccagaactga
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