Nocardioides coralli: K6T13_05760
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Entry
K6T13_05760 CDS
T08149
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ncq
Nocardioides coralli
Pathway
ncq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K6T13_05760 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncq03021
]
K6T13_05760 (rho)
03019 Messenger RNA biogenesis [BR:
ncq03019
]
K6T13_05760 (rho)
Transcription machinery [BR:
ncq03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
K6T13_05760 (rho)
Messenger RNA biogenesis [BR:
ncq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
K6T13_05760 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
SAP
HeH
VWA_2
ResIII
Motif
Other DBs
NCBI-ProteinID:
QZY30782
LinkDB
All DBs
Position
1172748..1174526
Genome browser
AA seq
592 aa
AA seq
DB search
MRIADLKSLAGSLGISGAGSMKKAELVSAIKAAQSGGQSGGAPAKERDSRDDQRPTDSGK
PADEPRSQDQPAHDKGERRDDRRDDRADDRRDDQGKQSRGDREADGSRDGGNDGAKDGGK
DTGRDGGKDGGKDKSRNRQDRDRQDRDRNRDQAQGNPGNQNQQNQNRNQGGGRPDDGDGR
SSRSRRRRGRDRNRGGGSGGSQRSEPDTTILEDDVLLPAAGILDVLDNYAFVRTSGYLPG
SEDVYLSLSMVRKFGLRRGDAIVGQVRQPREGERKEKFNPMVRVDSVNGADPEAARDRVE
FSKLTPLYPSDRLRLETEPTNLIGRVIDIAAPIGKGQRGLIVSPAKAGKTMIMQSIANSI
TTNNPECHLMVVLVDERPEEVTDFERSVKGEVISSTFDRPASDHTTVAELAIERAKRLVE
LGHDVVVLLDGITRLGRAYNLAAPASGRILSGGVDSAALYPPKRFFGAARNIENGGSLTI
LATALIESGSKMDEVIFEEFKGTGNMEIRLRRDFADKRLFPAIDAVQSGTRREELLMSKD
ELAIVWKLRRVLSGLDGQQALELLLERLKKSQSNIEFLMQVQKTTPGAGQND
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgcggatcgccgacctgaagtcgctggccgggagcctcgggatctccggtgccggctcg
atgaagaaggccgagctggtcagcgcgatcaaggcggcccagtcgggtgggcagtccggg
ggtgcgccggccaaggagcgcgacagccgcgacgaccagcgccccaccgacagtggcaag
cccgcggacgagccgcgctcccaggaccagcccgcgcacgacaagggcgagcgccgggat
gaccgcagggatgatcgtgccgatgaccgccgggacgaccagggcaagcagtcccggggc
gaccgcgaggccgacggctcccgcgacggtggcaacgacggcgcgaaggacggcggcaag
gacaccggccgggacggcggcaaggacggtggcaaggacaagagccgcaaccgccaggac
cgcgaccgccaggaccgcgaccgcaaccgcgaccaggcccagggcaacccgggcaaccag
aaccagcagaaccagaaccgcaaccagggcggtggccgacccgacgacggtgacggccgc
agcagccgcagccggcggcggcgtggtcgcgaccgcaaccgcggcggcggcagtggcggc
agccagcgcagcgagccggacaccacgatcctcgaggacgacgtgctgctgccggcggcc
ggcatcctcgacgtcctcgacaactacgccttcgtgcgcaccagcggctacctgcccggg
tccgaggacgtctacctgtcgctctcgatggtgcggaagttcggcctgcgccgtggcgac
gcgatcgtcggccaggtgcggcagccgcgtgagggtgagcgcaaggagaagttcaacccg
atggtccgcgtggacagcgtcaacggcgctgacccggaggcggcccgcgaccgggtcgag
ttctccaagctcaccccgctctacccgagcgaccggctgcgtctggagaccgagcccacc
aacctgatcgggcgcgtgatcgacatcgccgcgccgatcggcaagggccagcgcggcctc
atcgtctccccggccaaggccggcaagacgatgatcatgcagtcgatcgccaactcgatc
acgaccaacaaccccgagtgccacctgatggtcgtgctcgtcgacgaacgccccgaggag
gtcaccgacttcgagcgttcggtcaagggtgaggtcatctcctcgaccttcgaccgcccg
gcgagcgaccacaccaccgtggccgagctcgccatcgagcgcgccaagcggttggtcgag
ctcggccacgacgtcgtggtgctgctcgacggcatcacccggctgggtcgcgcctacaac
ctggcggcccccgccagcggccggatcctctccggtggtgtcgactccgcggcgctctac
ccgcccaagcggttcttcggcgccgcccgcaacatcgagaacggcggctcgctgacgatc
ctggcgaccgcgctgatcgagagcggctcgaagatggacgaggtgatcttcgaggagttc
aagggcaccggcaacatggagatccggctgcgccgcgacttcgccgacaagcggctcttc
ccggccatcgacgcggtccagtccggcacccggcgtgaggagctgctcatgtcgaaggac
gagctcgcgatcgtctggaagctgcgccgcgtgctgtcggggctcgacggtcagcaggcc
ctcgagctgctgctcgagcggctcaagaagtcgcagagcaacatcgagttcctcatgcag
gtgcagaagaccacgccgggcgccggtcagaacgactga
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