Nocardioides coralli: K6T13_06995
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Entry
K6T13_06995 CDS
T08149
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ncq
Nocardioides coralli
Pathway
ncq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K6T13_06995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncq03019
]
K6T13_06995
Messenger RNA biogenesis [BR:
ncq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K6T13_06995
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Motif
Other DBs
NCBI-ProteinID:
QZY30396
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Position
1432114..1433805
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AA seq
563 aa
AA seq
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MSHPHPELTAPPELPAGGLRVTPLGGLGEVGRNMTVFEHDGRLLVVDCGVLFPEEHHPGV
DLILPDFEPIRGRLDDIEALVLTHGHEDHIGATPFLLRERGDIPLVGSELTLALLDSKLR
EHRLRETVHHKVQEGDRISLGPFDLEFVAVNHSIPDALAVVIRTGAGVVLHTGDFKMDQL
PLDGRITDLRAFARLGEEGVDLFMVDSTNAEVPGFTTSEQEIGPVLERVFHESSQRIIVA
CFASHVHRVQQILDAAVEHGRKVAYVGRSMVRNMGIARDLGYLRVPPGVMVDAKELADLP
PEQQVLVSTGSQGEPLSALSRIAQRNHNFVHIEEGDTVVLASSLIPGNENAVYRVINGLS
RWGANVVHKGNALVHVSGHASAGELLYCYNIVRPRNVLPIHGEIRHMLANAALARRTGIP
ADNVVIAEDGVVVDLVDGQARIAGKVDCGYVFVDGSSVGDITESDLKDRRILGEEGFISV
IVVVDSVTGKVAGGPEIHARGFAEDDSTFDDIRQPIIDALDRAVADGVDDNYQLQQTVRR
VVGRWVNSTHRRRPMIIPVVIEA
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgtcacacccccacccggaactgaccgcaccccccgagctgcctgccggcggcctccgc
gtcacccccctcggggggctgggcgaggtcggccgcaacatgacggtcttcgagcacgac
ggccggctgctcgtcgtcgactgcggggtgctcttccccgaggagcaccatcccggcgtc
gacctgatcctccccgacttcgaacccatccgcggccgcctcgacgacatcgaggcgctg
gtgctcacccacggccacgaggaccacatcggagccacgccgttcctgctgcgcgagcgc
ggcgacatcccgctcgtcgggtccgagctcaccctcgccctcctcgacagcaagctgcgc
gagcaccggctgcgcgagaccgtccaccacaaggtccaggagggtgaccggatcagcctc
gggcccttcgacctcgagttcgtggcggtcaaccactcgatccccgacgcgctggccgtg
gtgatccgcacgggtgccggggtggtcctccacaccggcgacttcaagatggaccagctg
ccgctcgacgggcggatcaccgacctgcgggccttcgcgcggctcggcgaggagggggtc
gacctcttcatggtcgactccaccaacgcggaggtcccgggcttcaccacctccgagcag
gagatcgggcccgtcctcgagcgggtcttccacgagagcagccagcggatcatcgtggcc
tgcttcgcctcccacgtgcaccgggtgcagcagatcctcgacgccgcagtcgagcacggt
cggaaggtcgcctacgtcggccgctcgatggtgcgcaacatggggatcgcccgcgacctc
ggctacctgcgggtcccgcccggcgtcatggtcgacgccaaggagctcgcggacctgccg
cccgagcagcaggtgctcgtctccaccgggtcgcagggcgagccgctctccgcgctcagc
cggatcgcccagcgcaaccacaacttcgtgcacatcgaggagggcgacaccgtggtgctc
gcctccagcctcatccccggcaacgagaacgcggtctaccgggtgatcaacggactctcc
cgctggggcgccaacgtggtccacaagggcaacgccctcgtccacgtcagcggtcacgcc
agcgccggggagctcctgtactgctacaacatcgtccgacctcgcaacgtcctccccatc
cacggcgagatccggcacatgctggccaacgcggccctggcgcggcgtaccggcatcccg
gccgacaacgtggtgatcgccgaggacggggtggtggtcgacctggtcgacggacaggcc
cggatcgcgggcaaggtcgactgcggctacgtcttcgtcgacggctcctccgtgggtgac
atcaccgagtccgacctcaaggaccggcgaatcctcggcgaggaggggttcatctctgtc
atcgttgttgttgactcggttaccggcaaggttgccgggggcccggagatccatgcccgg
gggttcgcggaggacgactcgaccttcgacgacatccggcagccgatcatcgacgccctc
gaccgcgcggtggccgacggagtggacgacaactaccagctgcagcagacggtgcgacgg
gtcgtcggccggtgggtcaacagcacccaccgcaggcggccgatgatcatccccgtggtc
atcgaggcctga
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