KEGG   Nocardioides coralli: K6T13_06995
Entry
K6T13_06995       CDS       T08149                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
ncq  Nocardioides coralli
Pathway
ncq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ncq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    K6T13_06995
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ncq03019]
    K6T13_06995
Messenger RNA biogenesis [BR:ncq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     K6T13_06995
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B_2 Lactamase_B RMMBL
Other DBs
NCBI-ProteinID: QZY30396
LinkDB
Position
1432114..1433805
AA seq 563 aa
MSHPHPELTAPPELPAGGLRVTPLGGLGEVGRNMTVFEHDGRLLVVDCGVLFPEEHHPGV
DLILPDFEPIRGRLDDIEALVLTHGHEDHIGATPFLLRERGDIPLVGSELTLALLDSKLR
EHRLRETVHHKVQEGDRISLGPFDLEFVAVNHSIPDALAVVIRTGAGVVLHTGDFKMDQL
PLDGRITDLRAFARLGEEGVDLFMVDSTNAEVPGFTTSEQEIGPVLERVFHESSQRIIVA
CFASHVHRVQQILDAAVEHGRKVAYVGRSMVRNMGIARDLGYLRVPPGVMVDAKELADLP
PEQQVLVSTGSQGEPLSALSRIAQRNHNFVHIEEGDTVVLASSLIPGNENAVYRVINGLS
RWGANVVHKGNALVHVSGHASAGELLYCYNIVRPRNVLPIHGEIRHMLANAALARRTGIP
ADNVVIAEDGVVVDLVDGQARIAGKVDCGYVFVDGSSVGDITESDLKDRRILGEEGFISV
IVVVDSVTGKVAGGPEIHARGFAEDDSTFDDIRQPIIDALDRAVADGVDDNYQLQQTVRR
VVGRWVNSTHRRRPMIIPVVIEA
NT seq 1692 nt   +upstreamnt  +downstreamnt
atgtcacacccccacccggaactgaccgcaccccccgagctgcctgccggcggcctccgc
gtcacccccctcggggggctgggcgaggtcggccgcaacatgacggtcttcgagcacgac
ggccggctgctcgtcgtcgactgcggggtgctcttccccgaggagcaccatcccggcgtc
gacctgatcctccccgacttcgaacccatccgcggccgcctcgacgacatcgaggcgctg
gtgctcacccacggccacgaggaccacatcggagccacgccgttcctgctgcgcgagcgc
ggcgacatcccgctcgtcgggtccgagctcaccctcgccctcctcgacagcaagctgcgc
gagcaccggctgcgcgagaccgtccaccacaaggtccaggagggtgaccggatcagcctc
gggcccttcgacctcgagttcgtggcggtcaaccactcgatccccgacgcgctggccgtg
gtgatccgcacgggtgccggggtggtcctccacaccggcgacttcaagatggaccagctg
ccgctcgacgggcggatcaccgacctgcgggccttcgcgcggctcggcgaggagggggtc
gacctcttcatggtcgactccaccaacgcggaggtcccgggcttcaccacctccgagcag
gagatcgggcccgtcctcgagcgggtcttccacgagagcagccagcggatcatcgtggcc
tgcttcgcctcccacgtgcaccgggtgcagcagatcctcgacgccgcagtcgagcacggt
cggaaggtcgcctacgtcggccgctcgatggtgcgcaacatggggatcgcccgcgacctc
ggctacctgcgggtcccgcccggcgtcatggtcgacgccaaggagctcgcggacctgccg
cccgagcagcaggtgctcgtctccaccgggtcgcagggcgagccgctctccgcgctcagc
cggatcgcccagcgcaaccacaacttcgtgcacatcgaggagggcgacaccgtggtgctc
gcctccagcctcatccccggcaacgagaacgcggtctaccgggtgatcaacggactctcc
cgctggggcgccaacgtggtccacaagggcaacgccctcgtccacgtcagcggtcacgcc
agcgccggggagctcctgtactgctacaacatcgtccgacctcgcaacgtcctccccatc
cacggcgagatccggcacatgctggccaacgcggccctggcgcggcgtaccggcatcccg
gccgacaacgtggtgatcgccgaggacggggtggtggtcgacctggtcgacggacaggcc
cggatcgcgggcaaggtcgactgcggctacgtcttcgtcgacggctcctccgtgggtgac
atcaccgagtccgacctcaaggaccggcgaatcctcggcgaggaggggttcatctctgtc
atcgttgttgttgactcggttaccggcaaggttgccgggggcccggagatccatgcccgg
gggttcgcggaggacgactcgaccttcgacgacatccggcagccgatcatcgacgccctc
gaccgcgcggtggccgacggagtggacgacaactaccagctgcagcagacggtgcgacgg
gtcgtcggccggtgggtcaacagcacccaccgcaggcggccgatgatcatccccgtggtc
atcgaggcctga

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