Nocardioides coralli: K6T13_16125
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Entry
K6T13_16125 CDS
T08149
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ncq
Nocardioides coralli
Pathway
ncq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K6T13_16125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncq03019
]
K6T13_16125
03009 Ribosome biogenesis [BR:
ncq03009
]
K6T13_16125
Enzymes [BR:
ncq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K6T13_16125
Messenger RNA biogenesis [BR:
ncq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K6T13_16125
Ribosome biogenesis [BR:
ncq03009
]
Prokaryotic type
rRNA helicases
K6T13_16125
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
HEM4
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QZY28943
LinkDB
All DBs
Position
complement(3270722..3272452)
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AA seq
576 aa
AA seq
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MSTEPSEPSAVTFADLGVGAAVLKSLHEVGYETPSTIQARTIPPLLEGHDLVGLAQTGTG
KTAAFALPILERLDVSQKTPQALVLAPTRELALQVCEAFERYASHLKGVHVLPVYGGQGY
GVQLSALRRGVHVVVGTPGRIMDHLDKGTLDLSELRFLVLDEADEMLNMGFADDVERILA
DTPDTKQVALFSATMPPTIRRLASQYLSEPVEITVKGKTATSANITQRYLIVSYPQKVDA
LTRILEVENFEGMIVFVRTKNETETLAEKLRARGFSAQAINGDVPQQVRERTVNQLKAAK
LDILVATDVAARGLDVDRISHVVNYDIPTDTESYVHRIGRTGRAGRTGDAISFVTPRERY
LLKHIEKATRQPLTEMRLPTVDDVNVTRLARFDDQITGALGSAQVGFFRDVVSHYVREHD
VPEVDVAAALAVVLQGDTPMLLEEEPVRPAREHRGKEGRGAKDRPARRGGGREPSGPMAT
YRISVGKRQKVEPRQIVGAIANEGGLNRADFGAIVIRPDHSLVELPATLSEESWTALKQT
RISGKLIELTRDEGPPARRPGNRPRSGKKPHGKRHG
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaccgaaccgtccgaaccctcggccgtcacgttcgccgacctgggtgtcggcgcg
gcggtcctgaagtccctgcacgaagtcggctacgagacgccgtccaccatccaggcccgc
accatcccgccgctgctcgaggggcacgacctcgtcgggctggcgcagacgggcaccggc
aagaccgccgccttcgcgctgccgatcctcgagcggctcgacgtgagccagaagacgccg
caggcgctcgtcctggccccgacccgtgagctggcgctccaggtctgcgaggccttcgag
cgctacgcctcccacctcaagggcgtccacgtgctgcctgtctacggcggccagggctac
ggcgtccagctgtccgcgctccgccgcggtgtgcacgtcgtggtgggtacgccggggcgg
atcatggaccacctcgacaagggcaccctcgacctgagcgagctccgcttcctcgtgctc
gacgaggccgacgagatgctcaacatgggcttcgccgacgacgtcgagcggatcctcgcc
gacaccccggacaccaagcaggtcgcgctcttctcggcgaccatgccgccgacgatccgg
cgactggcctcccagtacctctccgagccggtcgagatcaccgtcaagggcaagaccgcg
acgtcggcgaacatcacccagcgctacctgatcgtcagctacccccagaaggtcgacgcc
ctgacccggatcctcgaggtggagaacttcgaggggatgatcgtcttcgtccgtaccaag
aacgagaccgagacgctcgcggagaagctgcgggcccggggcttctccgcgcaggcgatc
aacggcgacgtcccgcagcaggtgcgggagcggaccgtcaaccagctgaaggccgccaag
ctcgacatcctcgtcgccaccgacgtcgcggcccgcgggctcgacgtcgaccggatcagc
cacgtcgtcaactacgacatccccaccgacaccgagtcctacgtgcaccggatcggccgc
accggccgggccggccgcaccggcgacgcgatctcgttcgtcacgccgcgtgagcgctac
ctgctcaagcacatcgagaaggcgacgcggcagccgctcaccgagatgaggctgccgacg
gtcgacgacgtcaacgtcacccggctggcccgcttcgacgaccagatcaccggcgccctc
ggctcggcccaggtcgggttcttccgggacgtcgtgagccactacgtccgcgagcacgac
gtgcccgaggtggacgtcgccgcggcgctggccgtggtgctgcagggtgacaccccgatg
ctgctcgaggaggagcccgtacggccggcgcgggagcaccgcggcaaggagggccgaggc
gccaaggaccggccggcgcgccgcggtggcgggcgggagccgtccgggccgatggcgacg
taccgcatctccgtggggaagcgtcagaaggtggagccccgccagatcgtgggggccatc
gccaatgagggcggtctcaaccgtgccgacttcggggcgatcgtgatccggcccgaccac
tccctggtcgagctgccggccaccctgtccgaggagtcctggacggcgctgaagcagacc
cggatcagcggcaagctgatcgagctgacccgtgacgagggcccgccggcgcggcgaccc
ggcaaccggccgcggagcggcaagaagccgcacggcaagcgccacgggtga
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