KEGG   Neurospora crassa: NCU03517
Entry
NCU03517          CDS       T01034                                 
Name
(RefSeq) Ski8
  KO
K12601  superkiller protein 8
Organism
ncr  Neurospora crassa
Pathway
ncr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ncr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NCU03517
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ncr03019]
    NCU03517
Messenger RNA biogenesis [BR:ncr03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     NCU03517
SSDB
Motif
Pfam: Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st WD40 WD40_Prp19 ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_HPS5 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd WDR55 EIF3I Beta-prop_IFT140_1st Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st Beta-prop_DCAF12 Beta-prop_WDR35_TULP_N WDR90_beta-prop_4th Beta-prop_Vps41 Beta-prop_WDR75_1st Beta-prop_SPT8 eIF2A Beta-prop_Nup120_160 Beta-prop_VPS8 Beta-prop_NUP159_NUP214 Hira WD40_RFWD3 Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_EIPR1 Nucleoporin_N PALB2_WD40 DHHA1
Other DBs
NCBI-GeneID: 3872020
NCBI-ProteinID: XP_955873
UniProt: Q7RVN5
LinkDB
Position
II:complement(406059..407724)
AA seq 342 aa
MSKQYLTLHTVDQAHPTEIFSLAPTPNALISASGSSHLLIHSTTTSPTFPLTQTLSNAHR
LGCHHITTARGGPGNTFVSVGFGGDTKVWHRNPETDQWSLYWTLPTPDNKKEKGDVWAVA
LSADEGYLAATTSDGRIHVWDVLGKAKIQTYETGASAGGGGGHDSVGTGSFAMAVDLSRD
GKFTASGHENGGVYVFNNDAGRMVYSLSGLAKPIRAVAFSPGCKRLAAAGNAGIIAIYDM
QHGEHVANLSATGTRPAWITSIDWNDTGEYLLSGSLDGKVRVWDVARGVCVATHSETESA
LWCVRWLPKSEKVLAPGMGKGEMFVAAGANRSLTFYREATGS
NT seq 1029 nt   +upstreamnt  +downstreamnt
atgtcgaaacaatacctaaccctccacacggtggaccaagcccacccaaccgaaatcttc
tctctagcccccacccccaacgccctcatctccgcctccggctcctcccacctgctcatc
cacagcaccaccacctcacccacctttcctctcacgcaaaccctctccaacgcccaccgc
ctcggctgccaccacatcaccaccgcccgcggcggtcccggcaacacgtttgtctctgtc
ggtttcggcggcgacaccaaagtctggcaccgcaaccccgaaaccgaccagtggtcgctc
tactggacactcccgacccccgacaacaagaaggaaaagggcgatgtctgggccgttgcg
ctgagtgcggacgagggatatctagcggctacgacaagcgacggacggattcacgtgtgg
gatgttttggggaaggcaaagatacaaacctacgaaacgggggcgagtgcaggtggtggt
ggtggacacgacagtgtagggacgggcagctttgcgatggcggtggatttgagtagggat
ggcaagtttacggcgagtggacatgagaatggcggggtgtatgtgtttaataatgatgcg
gggaggatggtttattcgctttctggcctcgcaaaaccaatccgcgccgtcgccttctcc
cccggctgcaagcgtcttgccgccgctggcaacgcaggcatcatcgccatctacgacatg
cagcacggcgagcacgtcgccaacctatctgccacgggcactcggcccgcatggattaca
tcgatcgactggaacgacacgggcgaatacctgttgagcggatcgctggacggcaaagtc
agggtgtgggatgtggcgaggggtgtctgtgtcgcgacgcacagtgagacggaaagcgcc
ctctggtgtgtgaggtggttgccaaagtcggagaaggtgctcgccccggggatgggtaaa
ggggagatgtttgtggcggcgggagcgaatagaagtttgacgttttaccgggaggctact
gggtcatag

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