KEGG   Neurospora crassa: NCU04009
Entry
NCU04009          CDS       T01034                                 
Name
(RefSeq) exosome complex exonuclease Rrp4
  KO
K03679  exosome complex component RRP4
Organism
ncr  Neurospora crassa
Pathway
ncr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ncr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NCU04009
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ncr03019]
    NCU04009
Messenger RNA biogenesis [BR:ncr03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     NCU04009
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     NCU04009
SSDB
Motif
Pfam: RRP4_S1 ECR1_N KH_6 RRP40_S1 DUF6496
Other DBs
NCBI-GeneID: 3873811
NCBI-ProteinID: XP_957624
UniProt: Q1K617
LinkDB
Position
VI:complement(2432913..2434661)
AA seq 387 aa
MPITILPPKAFRDQPPRHSLNHDSDDVMSDATSDSEDSDSQPGGVSLDGGATIHPRKRHR
SGAGAAASSTFTKRPKTNAAINSIPRSAIVTPGERITTDPQWMRGHGTYLSSASLGEQAI
TSSLAGIVTRTNKLLSVRPLRARYTPEVGDLVVGRIVEVQAKRWRVDVGSTQLAALPLSA
INLPGGILRKRTETDELQIRTFFAEGDLVVAEVQQLFQDGGAVLHTRSLKYGKLRNGVFM
AVSGTGGGGGVVRSRRQVWTLESANNGGPIDVILGVNGYVWISKHVEPVVPEEAKGQTGI
TNLEEVVSATMYSSQNDRIEPETMREIARIRGVVTALVENGLRVDEDMVTKGYNEAVELA
LVSADGPEDVYLGGERGEQLAAALTAV
NT seq 1164 nt   +upstreamnt  +downstreamnt
atgcccatcacaatcctcccacctaaagccttccgggaccaaccaccccgccacagcctc
aaccatgactccgacgacgtaatgtccgacgccacctccgactctgaagactccgactcc
caaccgggcggcgtctctctcgacggcggcgcgaccatccaccctcgtaagcgtcatcgc
tccggcgccggcgcagccgcctcctctaccttcaccaagcgccccaagaccaacgctgcc
atcaactccatcccgcgctccgccatcgtcacccccggcgagcgcatcaccacggacccc
caatggatgcgcggccacggcacctacctctcctcggcctctttgggtgaacaagccatc
acctcctcgctggccggcatcgtgacgcgcaccaacaagcttctttccgtccgccctctg
cgcgcccgctacacgcccgaggtcggcgacttggtagtcggccgcatcgtcgaagttcag
gcaaaacggtggcgggtcgacgtcgggtccacgcagctcgctgctttgcctctttccgcc
atcaaccttcctggtggcattctccgcaaaagaacggagacggacgagttgcagatccgc
actttctttgccgagggggatctggtggtggccgaggtgcagcagctcttccaagatggt
ggtgcggtgctgcacacgcgctcgctcaagtacggcaagctgaggaacggggtgttcatg
gctgtttctggcacgggcggcggtggaggcgtggtcagatcgcgcagacaggtgtggacg
ctggagagtgcgaataatggcggtccgattgatgtgattttgggcgtcaatggctatgtc
tggatctcaaagcatgtggagcctgtggttcccgaggaggcgaagggccagacgggcatt
acgaacctcgaagaggtggttagtgctaccatgtattcgagccagaatgacaggatcgag
cccgagacaatgagggaaattgcgaggattaggggcgtggtaacggcgctggtggagaat
ggattgcgggtggatgaggatatggttacaaaggggtataatgaggccgtggagctggcg
ttggtgagcgcggatgggcccgaggatgtgtatttgggtggtgagagaggagagcagctt
gctgctgctttgacggctgtctag

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