Neurospora crassa: NCU04009
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Entry
NCU04009 CDS
T01034
Name
(RefSeq) exosome complex exonuclease Rrp4
KO
K03679
exosome complex component RRP4
Organism
ncr
Neurospora crassa
Pathway
ncr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCU04009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncr03019
]
NCU04009
Messenger RNA biogenesis [BR:
ncr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NCU04009
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
NCU04009
BRITE hierarchy
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Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
RRP40_S1
DUF6496
Motif
Other DBs
NCBI-GeneID:
3873811
NCBI-ProteinID:
XP_957624
UniProt:
Q1K617
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All DBs
Position
VI:complement(2432913..2434661)
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AA seq
387 aa
AA seq
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MPITILPPKAFRDQPPRHSLNHDSDDVMSDATSDSEDSDSQPGGVSLDGGATIHPRKRHR
SGAGAAASSTFTKRPKTNAAINSIPRSAIVTPGERITTDPQWMRGHGTYLSSASLGEQAI
TSSLAGIVTRTNKLLSVRPLRARYTPEVGDLVVGRIVEVQAKRWRVDVGSTQLAALPLSA
INLPGGILRKRTETDELQIRTFFAEGDLVVAEVQQLFQDGGAVLHTRSLKYGKLRNGVFM
AVSGTGGGGGVVRSRRQVWTLESANNGGPIDVILGVNGYVWISKHVEPVVPEEAKGQTGI
TNLEEVVSATMYSSQNDRIEPETMREIARIRGVVTALVENGLRVDEDMVTKGYNEAVELA
LVSADGPEDVYLGGERGEQLAAALTAV
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgcccatcacaatcctcccacctaaagccttccgggaccaaccaccccgccacagcctc
aaccatgactccgacgacgtaatgtccgacgccacctccgactctgaagactccgactcc
caaccgggcggcgtctctctcgacggcggcgcgaccatccaccctcgtaagcgtcatcgc
tccggcgccggcgcagccgcctcctctaccttcaccaagcgccccaagaccaacgctgcc
atcaactccatcccgcgctccgccatcgtcacccccggcgagcgcatcaccacggacccc
caatggatgcgcggccacggcacctacctctcctcggcctctttgggtgaacaagccatc
acctcctcgctggccggcatcgtgacgcgcaccaacaagcttctttccgtccgccctctg
cgcgcccgctacacgcccgaggtcggcgacttggtagtcggccgcatcgtcgaagttcag
gcaaaacggtggcgggtcgacgtcgggtccacgcagctcgctgctttgcctctttccgcc
atcaaccttcctggtggcattctccgcaaaagaacggagacggacgagttgcagatccgc
actttctttgccgagggggatctggtggtggccgaggtgcagcagctcttccaagatggt
ggtgcggtgctgcacacgcgctcgctcaagtacggcaagctgaggaacggggtgttcatg
gctgtttctggcacgggcggcggtggaggcgtggtcagatcgcgcagacaggtgtggacg
ctggagagtgcgaataatggcggtccgattgatgtgattttgggcgtcaatggctatgtc
tggatctcaaagcatgtggagcctgtggttcccgaggaggcgaagggccagacgggcatt
acgaacctcgaagaggtggttagtgctaccatgtattcgagccagaatgacaggatcgag
cccgagacaatgagggaaattgcgaggattaggggcgtggtaacggcgctggtggagaat
ggattgcgggtggatgaggatatggttacaaaggggtataatgaggccgtggagctggcg
ttggtgagcgcggatgggcccgaggatgtgtatttgggtggtgagagaggagagcagctt
gctgctgctttgacggctgtctag
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