Neurospora crassa: NCU04073
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Entry
NCU04073 CDS
T01034
Name
(RefSeq) hypothetical protein
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
ncr
Neurospora crassa
Pathway
ncr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCU04073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncr03000
]
NCU04073
03019 Messenger RNA biogenesis [BR:
ncr03019
]
NCU04073
04121 Ubiquitin system [BR:
ncr04121
]
NCU04073
Enzymes [BR:
ncr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
NCU04073
Transcription factors [BR:
ncr03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
NCU04073
Messenger RNA biogenesis [BR:
ncr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
NCU04073
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
NCU04073
Ubiquitin system [BR:
ncr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
NCU04073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Rtf2
SET_assoc
zf-RING_2
zf-C3HC4_3
Nup35_RRM_2
Baculo_IE-1
zf-UDP
Prok-RING_4
FYVE
Motif
Other DBs
NCBI-GeneID:
3873778
NCBI-ProteinID:
XP_957688
UniProt:
Q7RZE6
LinkDB
All DBs
Position
VI:complement(2648238..2655517)
Genome browser
AA seq
1618 aa
AA seq
DB search
MAPQDSFVDDEEETCPLCIEEFDLSDRNFRPCPCGYQICQFCFNNIRNNMNGLCPACRRP
YDDKTIQWKVVTQEEVAEFRANIQKNQKRRAAEQRQKEAQKREAEKENRKNLVGVRVVQK
NLVYVTGLTPTVREDELLKTLRRPEFFGQYGNIQKISISNRKSQDGQNQSLGIYVTFEKK
EDAARCIQAVNGSQNGDRVLRAQLGTTKYCSAWLRHEVCTNRQCMFLHELGDEEDSYSRQ
DLSSINSISSQRPLPVAGASRSASRQTGHPSPAPSNAQPMIRSSSKEESENGDGPALPSS
ATWARNPQVRSRRGSHATSGAAPSPAISNILPVTSESNREAVEDFPPIESTVHHPPPPQK
TKTEKSPKSAPKPAPKPAPPVEEASPAPAPAPAPAPAPVTAPVAAPAPPKVETSAKSTLE
KAKSASQDTLTKLLKSLNGCSLAWPKLGDDSTESAYPPLFDVRGGEKRRALRDDVTTGVA
ESHEGSAAATEPAEVEPESSGSLALGGEPEDRDPGRDFNLRGVAQPPIQRANNDGLFGSA
IGSGFSQGSTNLASIGSRTMTPQQPAFMRPQATGYDHLPPGITSQASLFQGQGHNRQGSR
FSFANEGQTTTATSVKLAANPRVMAQQASMMPSSFHSQPNTQFYASSMPGPPPGLKSTST
PPSMFGQHGFGSAFGNATKDTHEILQLLNRSRGAGSQVHDAGKHDDLPSFEEVTTSVDAL
VSDEPITTIRQPPGAFDNFGLTGTPIVAPPPGLGMPINQPSPAISHASLRAGTQTPPVAV
PVVPPKATTAAASTAASTAPPTSTPVTATASSVAVSTAASTTSTPTTAPSPLVSKNRKNS
VEKGMRYCPFCALDLPVAKDGKTINVLEAERHMDSCENDKKLRLAALAPEAKKNSKENIQ
ALAAESGLSRDIATVKAKAPKVLADEDFPALNSPKVQAAATTPAISTKTTATKSKAAKKA
EKAAEKEKPAPVLVIPAVAPTLPEPEPRPVDKKPAPVLNIAAATQVAQVKTAESSSATTE
KSVHDRDSAFPALPTPTTASVASPLARTAKTLRLVSTPKVETPSTPANAGVMSVSGSAAR
SIASISVRPETPASEMISDSASIVSASVSASRTSSPPPSKIGSAPVRATTKSQQRKARKE
QLKKETAAVAAQPIKSDPSEEIGPIIGRKKKQKKEKEKEKEKPSTTNTNVTPTVSRPETP
AQKEKETPPPPPTKEVKEVKEESSTYRSTANETTTLTDDASPIKTRGAKETPKSDAVSTP
RTLPTPGTIFQDLQKSGLVPEKIDDLPLFKPTSTGFEKSRNDHSNAAARENAARNAMTPT
KSIVTDEDQAALLAGHPVRKMIDGVRILLTPNGDCIRNLTEEEEDRFLELQARIAETASS
PAAFISSRHEAGGGFSLIKGRAVPNGPPGYFPQAPGQYPTDPVNKIQREEAIYYINQYVL
PRLNLNARDMSFPKAMSNWHPDQRGGNPAAAGLSSLAPWMYGAGSPASPHDNDAVAPEIS
YPAPVSAFADAHGSYLDMPPSPSPSALDDPMGHKGGAGLNIGGAPGPFGNVPLMSLEDAE
SALSAARKEGDKIEKHFNQTVRKNKRLLMAMGNPVSVGGSGGAHAAAATAAGGGGGAH
NT seq
4857 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgcaagacagcttcgtcgacgatgaagaagagacctgccccctctgtatcgag
gagtttgatctctctgatcgtaactttagaccatgcccctgcggataccagatatgccag
ttctgtttcaacaatatccgaaataacatgaatggcctgtgtcccgcatgcagaagacca
tacgacgataagactattcaatggaaggtggtcactcaggaagaggttgccgagttccga
gcgaatattcaaaagaaccaaaagcgacgtgccgccgagcaacgccaaaaagaagcccaa
aaacgcgaagccgaaaaggagaatcggaagaacttggtcggcgtccgggtcgttcagaag
aatctggtctacgtaactgggttgacgcctacggtacgcgaggacgagttgctcaagaca
ctccggcgtcccgaatttttcggacaatacggcaatatccaaaaaatatccatcagcaat
cggaagagccaagacgggcaaaatcagtccctcgggatttacgtcactttcgagaagaag
gaggatgctgccaggtgcattcaagcagtcaatggctctcaaaacggcgacagggtccta
agagctcaactgggtaccaccaagtattgttcagcttggctccgtcacgaggtatgcacg
aacaggcagtgtatgttcctgcacgagctcggcgacgaggaggacagctattctcgccaa
gacctgtcttcgatcaatagcattagcagccaacgacccctcccggttgccggtgcttct
aggtcggcatcccgccaaacgggtcacccctcgcccgcgccctcgaatgctcaaccgatg
atccggagttctagcaaggaggaatccgaaaacggcgatggccccgcgctgccctcttca
gctacctgggcgcgaaaccctcaggtccgtagccgacgtggaagccatgccactagcggc
gccgcccccagtcctgcaatctccaacattcttccagtcacttctgaatccaaccgagaa
gccgtcgaagatttccctccgatcgagagtacggtgcatcatccccctcctcctcagaag
accaaaaccgaaaagtcgcccaaatcggcgccaaagcctgcgccaaagcccgctcctcct
gttgaagaagcttcaccagctccggctcctgcaccggcgccggcaccggcccccgtcact
gctccagttgcagcacctgctccacccaaggtcgagacatccgccaagtccactctcgag
aaggccaagagcgcttcccaggacacgcttacgaagcttctcaaatcactcaacggatgc
tctctcgcctggcccaagcttggagatgactccacagagtctgcctacccacccttgttt
gacgtgaggggtggcgaaaagcggagggctttgcgcgacgatgtcaccaccggcgtggca
gagtcgcacgagggttccgcggcagctaccgaaccagccgaggtcgagcctgagagcagt
ggcagccttgctttgggaggtgagcctgaggaccgggatcctggacgtgacttcaatttg
cggggagttgcgcagccgcccattcaacgcgctaacaacgacggactgtttgggtcggcg
atcgggtctggcttcagccagggttcgaccaaccttgcatctattggcagtcgtaccatg
acaccgcagcagcctgctttcatgcgtccgcaggccacaggctacgaccaccttcctccc
ggaatcacttcccaggcgagccttttccagggtcagggacataaccgccagggctctcga
tttagcttcgcgaacgaggggcaaaccacgactgccacttcggtcaagcttgcggcaaac
cccagggtcatggctcagcaggcctccatgatgccttcgtccttccacagtcaacccaac
acgcagttctatgccagctccatgcccggccctccgcccgggctcaagtctacgagcacc
cctccgagcatgtttgggcaacacggtttcggctctgctttcggtaacgcgacgaaagat
acgcacgagattcttcagctcctcaaccgcagccgaggtgccggtagccaggttcatgat
gcgggaaagcatgatgatcttccctcgttcgaagaagtcacgacaagcgtagacgctctg
gtttctgacgaacccatcacgacgatacgtcaaccgcccggagccttcgataacttcggc
ctcaccgggactcctattgttgcccctcctccgggactgggtatgccaatcaaccaacct
tcccctgcgatttctcacgcatctttgagagccggaacgcagacaccgccggtcgccgta
cctgttgtccctcccaaggcaaccacagcagcggcgtctactgcagcgtctacggcaccg
cctacaagtacacccgtaacggcaacggcatctagtgtggcagtttccaccgcagcgtca
accacgtcaacgcctacaacagctcccagcccacttgtcagcaagaaccggaagaatagc
gtggaaaagggcatgcgatactgtcccttttgcgccttggatttgcctgttgccaaggat
ggcaagactatcaacgttttggaagcggagagacacatggattcgtgtgaaaacgataag
aagctccgtctcgcagctctcgcgcctgaggctaagaagaattccaaggagaacatccaa
gctcttgctgcggagagtgggctatcgagggatattgcaacagtcaaggcaaaggcgccg
aaagttttggcagacgaggacttccctgctctcaacagtcccaaggtccaggcggctgcc
acgacacctgccatttcgactaagactacggcaaccaagtctaaggcagccaagaaggct
gaaaaggctgcggaaaaagagaagcctgctcctgtgctggttataccagcggtagcgccc
actctacctgaaccagagccccgccctgtggacaagaaacctgccccagttctcaacatc
gctgcggctacccaggtcgcccaggtcaagactgctgagagttcatcagctacgacggag
aaatctgtccatgaccgggactcggctttccctgccctgcctacgccaacgactgcttca
gtggcctcgccgctcgctcggacagcaaagacacttagacttgtctcaactccgaaggtt
gagacgccctccacacccgccaatgctggtgtgatgagcgtctcgggctccgcggcccgt
tctatagcttctatttctgttagacccgagactcctgccagcgagatgatttcggatagc
gcatccatcgtctcagcctcggtctcggcatctcgcaccagctcaccgccgccgtccaag
atcggctctgcccctgtcagagcaaccaccaagagtcagcaaagaaaggcaaggaaggag
cagctcaagaaggaaacagcagctgtggcagcacagcctatcaagtctgatccgagtgag
gagatcgggcccattattggccgcaagaagaagcagaagaaggagaaggagaaggaaaag
gaaaagccaagcaccaccaacacaaacgtaacacccactgtcagtagaccggaaacacct
gcacaaaaggaaaaagagacgccgcccccgccacccacaaaggaggtgaaggaggtcaag
gaggagtcttcaacctaccgatcgacggctaatgaaacgacgacattgacggatgacgcc
tctccgattaagaccaggggagcaaaggagactccaaagtcagatgcggtttcaacccct
cgaactttgccgacacctggcacgatcttccaagatttgcaaaagtcggggcttgttccc
gagaagatcgatgacctgcctcttttcaagccaacaagcactgggtttgagaagtcgaga
aatgatcatagcaacgctgctgctagggagaacgcggctcggaacgccatgacgcctaca
aagtcgattgtgactgacgaggatcaggcagctctactcgcgggtcaccctgttcgtaaa
atgattgacggcgtccgcattctccttactcccaacggtgactgcattcgcaacttgacc
gaggaggaggaggatcggttcttggagcttcaggctcgcatcgccgagaccgcctctagc
cctgccgcgtttatttcctctcgccacgaagccggtggtggattcagtctgatcaaaggg
cgtgctgtgccgaacgggccaccgggctactttccccaggctccgggtcaatacccgacg
gatcctgtgaacaagatccagcgggaggaagcgatctactatatcaaccaatacgtcctg
ccgcggttgaacctgaacgccagagacatgagcttccccaaggccatgtcgaactggcac
ccggatcagcgcggcgggaacccagccgccgccggcctgagctcgcttgctccatggatg
tacggcgctggctctcctgcgtcgccgcatgataatgacgctgtggccccagagatcagc
tatcctgcccccgtcagcgcgtttgccgacgcgcatggatcgtacctggacatgccccct
tcaccgtcgccatctgctctagacgatcccatgggtcacaagggcggtgcgggcctcaac
attggcggtgctcccggcccgttcggcaacgtaccgctgatgagtctcgaagacgccgag
tcagctttgtcggctgcccgtaaggaaggggacaagatcgagaagcacttcaaccagacc
gtcaggaagaataagagacttctgatggccatgggtaatcctgtctcagtaggtggtagc
ggtggcgcgcatgctgctgctgctactgctgctggtggaggcggcggcgcgcattga
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integrated database retrieval system
