Neurospora crassa: NCU11251
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Entry
NCU11251 CDS
T01034
Name
(RefSeq) pre-mRNA splicing factor
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ncr
Neurospora crassa
Pathway
ncr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
NCU11251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncr03041
]
NCU11251
Spliceosome [BR:
ncr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
NCU11251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WD40_Gbeta
EIF3I
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
PRP4
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_Aladin
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR41
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_EIPR1
WDR54
Beta-prop_IFT140_1st
Beta-prop_RIG_1st
Beta-prop_Vps41
Beta-prop_DCAF4
Tricorn_2nd
PROPPIN
Motif
Other DBs
NCBI-GeneID:
5847683
NCBI-ProteinID:
XP_011393319
UniProt:
V5IPW0
LinkDB
All DBs
Position
I:complement(4872408..4874484)
Genome browser
AA seq
506 aa
AA seq
DB search
MDLDSVPLDRDYDIPGAGAGIAPEKASVLLSQFERKRLAASIAVPTDDGRVRAKLREMGE
PVTLFGEGPADRRDRLRELMTQQAEKGGQESADVEMRDAENEEDEAGDQEEEFYTTGSPE
LLQARIDIAHYSIPRAKKRIEFQKKESTIPLRTHVKHRKEIKEKLQGFELQGSQTAGERH
ISMTRISPDGNMVATGNWGGQVKLIEIPTLEPRKTLRGHTNKVSGLCWMPGATLPERNVS
PDTVNLASGGAEGQIHLWSLNQDTPLRTLSGHSQRVCRVEFHPSGKYLASASEDTSWRMW
DVETGTELLLQEGHSRGVYAVSYNSDGSLLASAGLDSIGRIWDLRTGRTAMILDGHQDGH
IKPIYGLDWGSDGYRVLTASADGWIKCWDVRKVERIGGIGAHTSAVADVRWFKGLDDPLE
GVPPGEDEKGMQIPKKSGTFMVSAGFDHKVNIFSADDWALVQSLSGHTGPVASVDVSRDG
KWIVSGGHDRTVKLWGRNDSRSLYDS
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggatctagactccgtccccctcgatcgcgactacgacatccccggtgctggggctggt
attgccccagagaaggcctccgttcttctatcgcagtttgaacgaaaacgattagcggct
tcgattgctgttcctaccgacgatggccgggtacgagccaaattgcgagagatgggcgag
cctgtcaccctcttcggcgagggtccggcagacagacgcgacagattacgagaactcatg
acacaacaagccgaaaagggaggtcaggaaagtgccgatgtggagatgcgggacgccgaa
aacgaggaagatgaagccggcgaccaagaggaggaattttacactactggaagcccggaa
ctgctccaggcccgcatcgacatcgctcactactcaatcccgagagctaagaagcgcatc
gagttccagaagaaggagtccaccatcccactgcggacacatgtcaaacaccgaaaagag
atcaaggagaagcttcaagggtttgaattgcaaggcagtcaaacggcaggagagcggcac
atcagcatgacaaggatctcgcctgatggaaacatggtcgcaactggcaattggggcgga
caggtcaaactcatcgaaatcccaacccttgagccaaggaagactttgaggggccacacc
aacaaagtcagcggcctatgctggatgcctggagctacactgccggagcgcaatgtttct
cccgacacagtcaatctcgcttccggaggagcggaaggccagattcatctctggtctttg
aaccaagacacgcctttgagaactctctcaggacactcgcaacgagtatgtcgtgtagag
ttccatccatcgggcaagtatctggcttctgcctcagaagacacgtcatggaggatgtgg
gatgttgaaaccggcaccgagctccttctccaggaaggtcactctcgcggtgtatacgct
gtcagttataacagtgacggatcgctactcgctagcgcgggtttggacagtatcggaaga
atctgggatctgcggacaggacggactgccatgattctagatgggcatcaggacggccat
atcaagcctatttatggtttggactggggctcggacggttacagggtgctcacggcgtct
gctgatggttggatcaaatgctgggacgttagaaaagtggaaagaattggaggcattggt
gcccatacaagtgcagtggccgacgtgcggtggttcaaggggttggatgacccgttggaa
ggagtgcctcctggcgaagatgaaaagggaatgcaaattcccaaaaaatccggcaccttt
atggtgtcggcaggctttgaccacaaggtgaacatattttccgctgacgactgggccttg
gttcagtctctcagcggccacacagggcctgttgcgagtgttgacgttagccgggatgga
aaatggattgtaagcggtggccatgaccggacggtcaaactttggggaagaaacgactcc
aggagcttgtatgattcctga
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integrated database retrieval system