Naumovozyma castellii: NCAS_0A07540
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Entry
NCAS_0A07540 CDS
T02233
Symbol
NCAS0A07540
Name
(RefSeq) RNA-processing protein PTA1
KO
K06100
symplekin
Organism
ncs
Naumovozyma castellii
Pathway
ncs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ncs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
NCAS_0A07540 (NCAS0A07540)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncs03021
]
NCAS_0A07540 (NCAS0A07540)
03019 Messenger RNA biogenesis [BR:
ncs03019
]
NCAS_0A07540 (NCAS0A07540)
Transcription machinery [BR:
ncs03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
NCAS_0A07540 (NCAS0A07540)
Messenger RNA biogenesis [BR:
ncs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
NCAS_0A07540 (NCAS0A07540)
U7-dependent histone pre-mRNA processing factors
NCAS_0A07540 (NCAS0A07540)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
96900791
NCBI-ProteinID:
XP_003673693
UniProt:
G0V764
LinkDB
All DBs
Position
1:complement(1495424..1497739)
Genome browser
AA seq
771 aa
AA seq
DB search
MEGVKSETLAMPNSDLNGLIQARSLAHEKNPEETLPKVLDTTSTIYFPQYLTKYTDIPLS
RFFTDLFHEILNHPKISSIEKSLIASSHIHELYLIAQNVKDPVTYKTAVLTFANAYPLLI
DLISKTSNEDTWKIMTSFKKFIISNWDTTYPLTDLNSIDLNNDVKNLGCKLASVKFISQV
IIVHITPTDMDENSSMKNVIIPNNHPVLGAKKNLEREAKKYLDLLLNYLVEEVMMCSELF
MGIINCLAFIMKARVRTTVRILSAILKFNIDAKYMVEGMTPLKFRLCKRMIERCYKNFVQ
FGMKHQLIKKDMTGTIFGDNAVDFYSKLGKISQTLFGIGEEAKAKGILNFDEALFTHTIP
DKKKTDILARRKFLDIQRKIESNNDLLKKLQKYTMDKLESSGDDRTKIFNTSTVAIDNSY
SAIFSLMNSDNSKFDLSKFKNEEPNNDSQTPLDQNILIKLCLEALTGTGGDNTRFISALS
IVASRYTNLMGKTKSSGDGERKRKLDTDNKDNENSKRIKTENGLVKEEEDDEEEEEDEYQ
PNNLVEEKQIFKSEPMSQEDKVANLKRIITRIISIKDIPNDNGNILLNNKLNSELLHKLK
LLDWKNEESGFHILIRLAIRGIGIDSVEMADLIRDTLYEYCLQDFDSRVALILEWMNEEW
YYEMVSETNEYATYDKWSNKLLDGLIPFIENKHRRFFIRLMSELPRLTEAHLNKMKQICL
DPARNSLGFQTLKFLVMFRPPVKDIIKSFLESLMTEDSSLEAQCQSILKKC
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgtaaaatcagaaacacttgccatgccgaactcggatttgaatggcttaatt
caggccaggtcgttagcacacgaaaagaatccggaagaaacactgcctaaagtactagat
accacttcaaccatatactttccgcaatatctaactaaatacacagatatcccactctcc
aggttcttcaccgatttgtttcatgaaattttaaatcacccaaagatatcatcaattgaa
aaatcattaattgcatcctctcatatacatgaactatatctcatagctcaaaatgtaaaa
gatcccgttacttataagactgctgtgcttacatttgccaatgcatatccattattaatt
gatttaatttccaagacctctaatgaggatacttggaagataatgacatcgttcaagaag
tttatcatatccaattgggatacaacatatccattaactgatcttaattccatcgactta
aataatgacgtcaagaatcttggctgtaaattagcttctgtgaaatttatatctcaagtg
ataatagttcatatcaccccaacagatatggatgagaattcaagcatgaaaaatgtcatc
attcccaacaatcatcctgtattaggagcgaagaagaatttggagagggaagctaagaaa
tatctagatttgttgttaaactacttggttgaggaagtgatgatgtgctctgaattattt
atggggataattaattgtcttgcattcattatgaaagccagagtacgaactacagtcagg
attctttctgcaatcctgaagttcaatatagacgctaaatatatggttgaaggaatgact
cctttaaaatttagactgtgcaaaagaatgattgaaagatgttataaaaatttcgttcaa
tttgggatgaaacatcaattgattaagaaagatatgactggcactatctttggagataat
gccgttgacttctatagcaaattggggaaaatttctcaaactttatttggtataggtgaa
gaagctaaggcaaagggtatattgaattttgatgaagctctttttactcatacgatacct
gataagaagaagacagatatattggcacgtagaaaatttcttgatatacagaggaaaatt
gaatctaacaatgatttgctaaaaaagctacaaaaatacaccatggataaattagagtct
agtggtgatgatagaacaaaaatctttaatacttcaactgttgccattgataattcatac
agcgccattttttcccttatgaatagtgacaattcaaagtttgatttgtctaaatttaag
aatgaagagcctaataatgattcccaaaccccgttggatcaaaatatcttgattaaatta
tgtttagaggccttaactggaactggtggggataatacaagatttatttctgcattatct
attgtagcatcaagatatacaaacctcatgggcaagactaaaagctctggtgacggcgaa
aggaaacgtaaattagatacagataataaggataatgaaaacagtaaaagaatcaaaaca
gagaatggattagtaaaagaagaagaagatgatgaagaggaagaggaagatgaatatcaa
cctaacaacttggtggaagaaaaacaaatctttaaatcagaaccaatgtcacaagaggat
aaggtagccaatctaaaacgtatcattacgcgaattatttctatcaaggatatacctaat
gataacggtaatatattgttgaataacaaacttaatagtgaacttctccacaaattgaaa
ttactcgattggaaaaatgaagaatctggattccacattttaatcagattagctatccgt
ggtattggcatagactctgttgaaatggcagatctaattagagatacactctacgaatat
tgtttacaggattttgattctagagttgcactcatactggagtggatgaacgaagaatgg
tattatgaaatggtgtccgaaacaaacgaatacgctacatatgacaaatggtccaataaa
ttattggatggattaatcccatttatagaaaacaagcatagaagattctttattcgtttg
atgagtgaattgccaagattaacagaagctcatctcaataagatgaaacaaatatgtctt
gatcctgcaagaaattcattagggtttcaaactttaaaatttttggtcatgtttagacct
cccgtgaaagatattatcaagagtttcctagaatcgttaatgacagaagatagcagcttg
gaggctcagtgccaatccatattaaagaagtgttag
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