Naumovozyma castellii: NCAS_0A07730
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Entry
NCAS_0A07730 CDS
T02233
Symbol
NCAS0A07730
Name
(RefSeq) ATP-dependent RNA helicase NAM7
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ncs
Naumovozyma castellii
Pathway
ncs03013
Nucleocytoplasmic transport
ncs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ncs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
NCAS_0A07730 (NCAS0A07730)
03015 mRNA surveillance pathway
NCAS_0A07730 (NCAS0A07730)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncs03019
]
NCAS_0A07730 (NCAS0A07730)
Enzymes [BR:
ncs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
NCAS_0A07730 (NCAS0A07730)
5.6.2.5 RNA 5'-3' helicase
NCAS_0A07730 (NCAS0A07730)
Messenger RNA biogenesis [BR:
ncs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
NCAS_0A07730 (NCAS0A07730)
mRNA cycle factors
Common to processing body (P body) and stress granule
NCAS_0A07730 (NCAS0A07730)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
SLFN-g3_helicase
ResIII
UvrD-helicase
Viral_helicase1
NPHP3_N
DEAD
nSTAND3
NAT10_TcmA_helicase
AAA_22
PhoH
AAA_16
DUF2946
T2SSE
ATPase
Motif
Other DBs
NCBI-GeneID:
96900810
NCBI-ProteinID:
XP_003673712
UniProt:
G0V783
LinkDB
All DBs
Position
1:complement(1536668..1539646)
Genome browser
AA seq
992 aa
AA seq
DB search
MSTSITEDVLKPTIEENDLFYNSESDFAKVAHELADMEDELDGQDEETAALQAAQMDADG
MHHNFPQAEHACAYCGVDSPTCVIKCNSCNKWFCNSKNGTNSSHIVNHLVLSHHNVVSLH
PDSDLGDTILECYNCGCKNVFLLGFVSAKSEAVVVLLCRMPCAQTKNVNWDTDQWQPLIE
DRQFLSWVAEEPSEEEKLKARLITPSQISKLEAKWRSNKDATINDIDAPEEQEELPPLLL
RYQDAYEYQRSYGPLIKLEADYDKQLKESQALEHISVTWSLALNNRHLASFALSTFESNE
LKVAVGDEMILWYSGVQHPDWEGRGYIVRLPNSFQDTFTLELKPSKVPPPTNLTTGFTAE
FIWKGTSYDRMQDSLKKFAIDKKSISGYLYYKILGHQVVDITFDVPMPKQFSIPHFTQLN
DSQSNAVQHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKERVLVCAPSNVAVDHLAA
KLRDLGLKVVRLTAKSREDVESSVSNLALHNLVARSSKGELRKLLTLKEEVGELSASDTK
KFVKLVRRTEAEILAKADVVCCTCVGAGDKRLDTKFRTVLIDESTQATEPECLIPIIKGA
KQVILVGDHQQLGPVILERKAGDAGLKQSLFERLISLGHIPIRLEVQYRMNPYLSEFPSN
MFYEGSLQNGVTIEQRTVPNSTFPWPIHDVPMMFWANYGREELSSNGTSYLNRIEAMNCE
RIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKEMYVKVEVASVDAFQGREK
DYIILSCVRANDQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLSKNILWNHLLLHFRE
KGCLVEGTLDNLQLCTVQLTRPKPKRQQNMNSQFQLNMNAEMSKFPNVQDFDTQSLMSFG
GQAGGFNSGFGNNEDFSSYLNNDYWNFENFQTVPPGAAPDFNNGDSMSTNVYSKNGPMLD
SNYAAELERNGPTGSRYDANEGLSKDFNSLNI
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccagcataactgaagatgttttaaagcctaccatagaggaaaatgatttattt
tacaactctgaaagtgatttcgcaaaagtagctcacgagttagccgacatggaagatgaa
ttagacggccaggacgaagagaccgccgctctacaagctgctcaaatggacgcagatgga
atgcaccataatttccctcaagcagaacatgcatgtgcttattgtggtgtggattcgcca
acgtgcgttattaagtgtaatagttgcaataaatggttttgtaattctaagaatgggacc
aatagttcccatattgtcaatcatttggttttgtcccatcataatgtggtttcgttacat
ccagactcagatttgggggataccattttggaatgttataattgtggttgtaagaacgta
ttcttattgggatttgtctctgctaagagtgaagcagttgtcgtcttactttgtagaatg
ccatgtgctcaaacaaagaacgttaattgggatactgatcaatggcaacctttaattgaa
gatagacaatttttatcatgggtcgctgaagaaccaagtgaagaggaaaaattaaaggca
agactaatcaccccaagtcaaatctccaaattggaagccaaatggagatctaataaagat
gcaacaattaatgacattgatgctccagaggaacaggaggaacttcctcctttactatta
agataccaagatgcgtatgaatatcaaagatcatatggtcctttaatcaaattggaagca
gattatgataaacaattaaaggaatctcaagcattggaacatatctctgtaacatggtct
ctagcattaaataatagacaccttgcatcgtttgcactatcaacttttgaatctaacgag
ttgaaagtggcagttggagatgaaatgatcttatggtattcaggagtacagcacccagat
tgggaaggtcgtggttatattgttcgtttaccaaacagtttccaagatacatttacatta
gaattaaaacctagcaaagtgccaccaccaactaacttgactactggatttaccgctgaa
tttatttggaagggtacctcatatgatagaatgcaagatagtttaaaaaagtttgccatt
gataaaaaatctatctcaggttatctgtattataaaattttaggccatcaagttgtggat
attacattcgatgttccaatgcccaaacaattttcaattccacattttacacaattgaat
gattcacaatcaaatgctgtacaacatgttcttcaaagaccactttctttgattcaaggg
cctccaggtactggtaagacggtaacatcagcaactattgtttatcatttatcaaagatt
cataaggaaagagttctagtttgtgctccatcaaatgttgcagttgatcaccttgcagca
aagttacgggatttagggttgaaggttgttagattaaccgcaaagagtcgtgaagatgtg
gaaagttctgtatcgaacctagctctccacaacctagttgctagaagctctaaaggtgag
ttgagaaaattactcaccttaaaggaagaagtaggtgaactatctgccagtgatacaaaa
aaatttgtcaaattggttagaaggacagaagctgaaattcttgctaaagcagatgttgtc
tgttgcacttgtgtcggtgccggtgacaaaaggttagataccaaatttagaactgttctt
attgatgaaagtactcaagccactgaaccagaatgtctaattcctatcattaagggtgct
aaacaagttatcttagttggtgatcaccaacaattaggtccagttatcttggaaagaaag
gcaggtgatgctgggttaaagcaatcattatttgaaagattgatctccttgggacatatc
ccaattagactggaagttcaataccgtatgaatccgtatttaagtgagttcccaagtaat
atgttttatgaggggtcgttacaaaatggtgtaaccattgaacaaagaactgttccgaac
agtactttcccatggccaattcatgatgttccaatgatgttttgggcaaattatgggagg
gaagaactatcatctaatggtacatcatatctaaatagaattgaggccatgaattgtgag
cgtatcattacgaaactttttagagacggggttaaaccagaacaaattggtgttattacc
ccatatgaaggtcaaagagcttatattcttcagtacatgcaaatgaacggatctttagat
aaagaaatgtatgtcaaagtggaagtggcatcagttgatgcgttccaaggtcgtgaaaaa
gattatattattttatcatgtgttcgtgccaatgaccaacaggcaattgggttcttacgt
gatcctcgtcgtttgaatgttggtttaactcgtgcaaaatatgggttagtaattttaggt
aatccaagatcattatccaagaatattttgtggaatcatttattacttcattttagagaa
aagggttgtttggtagaaggtacattggataatcttcaattgtgcactgttcagttgaca
agaccaaaaccaaagaggcaacaaaatatgaatagtcagttccaattaaatatgaatgct
gaaatgagtaaatttccaaatgttcaagattttgatacacaaagtttgatgtcatttggt
ggacaagcaggtggatttaacagtgggtttggaaataatgaagacttctcttcctacttg
aataatgattattggaattttgaaaatttccaaactgtgccacctggagcggctcctgat
ttcaataatggagattcaatgtccactaatgtttactccaagaatggtcctatgttagac
tcaaattatgcagcagaattggaaagaaacggtccaactggctctagatatgatgcaaat
gagggcttaagcaaagattttaactctcttaacatttaa
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