Naumovozyma castellii: NCAS_0A09110
Help
Entry
NCAS_0A09110 CDS
T02233
Symbol
NCAS0A09110
Name
(RefSeq) ATP-dependent RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ncs
Naumovozyma castellii
Pathway
ncs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCAS_0A09110 (NCAS0A09110)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncs03019
]
NCAS_0A09110 (NCAS0A09110)
03041 Spliceosome [BR:
ncs03041
]
NCAS_0A09110 (NCAS0A09110)
03009 Ribosome biogenesis [BR:
ncs03009
]
NCAS_0A09110 (NCAS0A09110)
03016 Transfer RNA biogenesis [BR:
ncs03016
]
NCAS_0A09110 (NCAS0A09110)
Enzymes [BR:
ncs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NCAS_0A09110 (NCAS0A09110)
Messenger RNA biogenesis [BR:
ncs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
NCAS_0A09110 (NCAS0A09110)
Spliceosome [BR:
ncs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
NCAS_0A09110 (NCAS0A09110)
Complex C
U4/U6.U5 tri-SnRNP related factors
NCAS_0A09110 (NCAS0A09110)
Ribosome biogenesis [BR:
ncs03009
]
Eukaryotic type
Pre-60S particles
Helicases
NCAS_0A09110 (NCAS0A09110)
Transfer RNA biogenesis [BR:
ncs03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
NCAS_0A09110 (NCAS0A09110)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
DUF155
Death_3
YodE
AAA_22
HTH_Tnp_ISL3
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
96900948
NCBI-ProteinID:
XP_003673850
UniProt:
G0V7M1
LinkDB
All DBs
Position
1:complement(1801017..1804211)
Genome browser
AA seq
1064 aa
AA seq
DB search
MDSNDLFDVFDEAPADIPLINENEDDKPLVETTEVAKKHSLSDNEAEPEKEVKKKSKGHS
LEKKEKSQVVPVVADSFEQEASREVDASTGLTNSATTQVEEDGKVKLSHQVRHQVALPPN
YDYTPIADHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQS
LREKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYR
GSEVMREVAWVVFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICK
IHTQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISTQEGDDP
NSINSRGKKGQTFKGGAAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSK
LDFNSEDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIE
ILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG
LDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLEHS
FYQFQNVISVPIMEKKIVELNKEIEDIQVDDEENVKDYYEVRQTLDNYNEDVRHIITHPA
NILSFLQPGRLIEVSVGKQYYGWAAVVDFVKRMNKRNPSAEFTDHESYIVNVVVNTMYVD
SPLNLLKPFNPEFPEGIRPAEDGEQAVSAIIPITLDSIRAVGNLRLFMPKDVKAGNQKET
VGKSLKEVGRRFPDGVPLIDPIKNMKIEDTDFLKLMKKIEVLESKLFANPLAQSVRLSEL
YEKYSKKHALIHDTKQLKQKINESQAVIQLDDLRRRKRVLRRLGFSTPSDIIELKGRVAC
EISSGDELLLTELIFNGNFNELTPEQSAALLSCFAFQERCKEAPRLKPELSEPLKAMREL
ASKIAKIMKDSKIEVVEKDYVESFRHELMEVVYEWCKGATFTQICKMTDVYEGSLIRMFK
RLEELVKELVDVANTIGNAALKEKMETVLKLIHRDIVSAGSLYL
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atggattcaaacgatttatttgatgtctttgacgaggctccagctgatatccctctgata
aacgaaaatgaagacgataaacctttagtagagacaacggaagtcgccaagaaacactct
ctttcagataatgaagctgaaccagaaaaggaagttaagaagaaatctaaaggtcattcc
ttggagaagaaagaaaagtcacaagtggtacctgttgttgcagattctttcgaacaagag
gcttccagagaggtggatgcctccactggtttgactaactcagctactactcaagttgaa
gaagatggtaaagttaaattgtcacatcaagtgcgtcatcaagttgctctacctccaaat
tatgattacacgcctattgcagatcacaagagagttaatgaagcacgtacatacccgttt
acgttggatcctttccaagatacagccatatcttgtattgacagaggtgaatctgtctta
gtctcagcgcatacatcagcaggtaagactgtagttgcagaatatgcaattgcacaatca
ttgagagaaaagcaaagagtgatttatacatctcctatcaaagcattatcaaaccaaaag
tacagagaattattagctgaatttggtgatgttgggttgatgactggtgatattactata
aaccctgacgcaggttgtttggttatgactactgaaattttaaggagtatgctctacaga
ggtagtgaagtcatgagagaagttgcatgggtagtttttgatgaagtgcattatatgaga
gacaaagaacgtggtgttgtttgggaagaaactattattttattaccagataaggtccgt
tatgtgtttttatctgctaccattcctaatgccatggaatttgcagaatggatttgtaag
atccatactcaaccttgccatattgtgtatactaatttccgtccaaccccacttcaacat
tatttattcccagctcacggtgatggtatttacttagtggttgatgaaaagagtactttc
agggaggagaactttcagaaagcaatggcttctataagtacacaagaaggtgatgatcca
aattcgataaattcaagaggtaagaaaggacagacatttaaaggtggtgccgcaaagggt
gatgccaagggagatatttataagattgttaagatgatctggaagaagaaatacaatcca
gtcattgttttctcttttagtaaacgtgattgtgaagaattggctttgaagatgtccaaa
ttagacttcaattctgaggatgaaaaggaagcattgactaagattttcaacaatgctatt
gcattattaccagaaacagatagagaattacctcaaattaaacatatacttccattatta
agaagaggtattggtatccatcattctgggttgcttccaatcttaaaagaagtaattgaa
attttatttcaagaagggtttttgaaggttttatttgcaacagaaacattttccattggt
ttgaatatgcctgccaagaccgttgtttttacatcagttaggaaatgggatggtcaacaa
ttccgttgggtttctggtggtgaatatattcaaatgtccggtcgtgccggtcgtcgtggt
ttggatgatcgtggtattgttatcatgatgattgacgaaaagatggaaccacaagttgcc
aaagggatggttaagggtcaagccgatagattagactcagctttccacttaggttacaat
atgatcttgaacttaatgagagtagaaggtatttcaccagagtttatgttggagcattca
ttttatcaatttcaaaatgtcatatctgtcccaatcatggaaaagaaaatagtcgaattg
aataaggaaattgaagatattcaagtagatgatgaggaaaatgttaaagattactatgaa
gttagacaaacgttagataattataatgaagatgttcgtcatattatcacacatccagct
aatattttaagtttcttacaacctggtagattgattgaagtgtccgttggtaaacaatat
tatggatgggcagcagttgttgattttgtgaaaagaatgaataaacgtaatccttcagca
gaatttactgatcatgaatcatatattgttaatgttgttgtgaataccatgtatgttgat
tcacctctaaatctattgaaaccattcaatccggaattcccagaaggtattcgtcctgcc
gaggatggagaacaggctgtgtcagcaattattcctattacattagattccattagggcg
gttggtaatttaagattattcatgccaaaagatgtcaaagctggtaatcaaaaagaaact
gttggcaaatctttgaaggaagttggacgcagatttccagatggtgtcccattaattgac
cccattaagaatatgaaaattgaggataccgattttttgaagttaatgaaaaaaattgaa
gtccttgaatctaaattatttgctaatccattggcgcaatctgtcagattaagtgaactt
tatgagaaatatagcaagaagcatgcgttgatacatgatacaaaacaattgaaacaaaag
ataaatgaatcacaggctgttattcaattagatgatttacgtcgtcgtaagagagttcta
cgtcgtttaggattttctaccccaagtgatattattgaattgaaaggtagagttgcatgt
gaaatatcgagtggtgacgaattattattaactgagctaatttttaatggtaacttcaac
gaacttacaccggaacaatctgctgcgttgctttcttgttttgcattccaagaacgttgt
aaagaagcaccaagattaaaaccagagttatcggaaccattaaaggctatgagagaactt
gcgtctaagattgccaaaataatgaaagattctaaaattgaagttgttgaaaaggactac
gtcgaaagttttagacatgaattaatggaggttgtctatgaatggtgtaaaggtgccacc
ttcactcaaatttgtaagatgacagatgtttatgagggatctctaattagaatgtttaaa
aggttggaggaattggtgaaagaactggtcgatgttgccaacactattggtaatgccgca
ctaaaggaaaaaatggaaactgtgttgaaattaatacatagagatattgtttcagcaggt
tctctgtatttatag
DBGET
integrated database retrieval system
