Naumovozyma castellii: NCAS_0A12160
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Entry
NCAS_0A12160 CDS
T02233
Symbol
NCAS0A12160
Name
(RefSeq) mRNA splicing protein SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ncs
Naumovozyma castellii
Pathway
ncs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
NCAS_0A12160 (NCAS0A12160)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncs03019
]
NCAS_0A12160 (NCAS0A12160)
03041 Spliceosome [BR:
ncs03041
]
NCAS_0A12160 (NCAS0A12160)
Messenger RNA biogenesis [BR:
ncs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
NCAS_0A12160 (NCAS0A12160)
Spliceosome [BR:
ncs03041
]
Complex B
Other components
Prp19-related factors
NCAS_0A12160 (NCAS0A12160)
Complex C
NCAS_0A12160 (NCAS0A12160)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_M
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_8
TPR_2
TPR_12
Mad3_BUB1_I
TPR_16
Motif
Other DBs
NCBI-GeneID:
96901253
NCBI-ProteinID:
XP_003674155
UniProt:
G0V8H6
LinkDB
All DBs
Position
1:2408461..2411037
Genome browser
AA seq
858 aa
AA seq
DB search
MVLQDDYDLGKDNQEFWNMSELIDRYIKDEEDVAFEYELQGTPQSLLTWKRYLEHWKQQG
RPSEHIEWLYERSCLQFKDNQDVWEEYLKWLLQNWKDTHETTASDYWRIANVFKRCINAA
NGKPFLNVSLLFLEFAMEQRDLKLILDTFDMTLKNVKTNDQGKLWNLILKFVNEKLLSLT
FAESSLDDLDDNQNDQLFLIIYQAVFVSSNVTNELNDEANIWASHLLERFIQVCNEKSIN
MVLSYFYRTQDHKRIKRVYEKYLISKSKKSSSWLPNPKLPYQLNINYLNTLEALHRDKEY
EAFMGEMRKIFPEESTNLIIILCSHYVKRAEFQKFEKFISESLTTTISLKDFTTIFNFQI
NVEQILIETVVNELKDNEDLKDDEKWNNLLNEHLKIFQNLVDTRKLKTNDLKLRQDPNNV
STWQERVSLFKSNKRKCEIFTEAILAIDPLKVSVPGSFGNLWCDYAQIYWDAGNYDVARE
IYDRALKVPFPFLDDLTNIWTEWVEKELDLEGIEKPIQLLEHALEAPEHPTVVIERFKNG
HGKVPAQTVVFNSSKLWSIYIDLLETLALSEEGDEMAVAKVIKAYEQTIKLKVITPLRFI
NYSHFLQHHNMIMESYQIYERAIPLFTAETQYELWNIYLAEVVNPLSPLSKEHIRELFEH
AIRTLLPFGIDCKSIFILYSDFEEKQGLLKRSVDILWKGAQTNGQGTIHLKSRLGLWNLC
LFKAQSHLGLSVSRQIYEDCIQQVPNSKSAPYIIGFADAETSGGEITRSREILEYGARLI
PPAKNTSLWNYWETFELKHGDKETYKDMLKLKRKLDVEMRVDTEQVTTNDGNVQFVASTA
TTEKTKDILNTEEIELDI
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atggtcttacaagatgactacgatctcggtaaggataaccaggagttctggaatatgagt
gaacttattgacaggtatatcaaggatgaagaagatgttgcctttgaatacgaactacaa
ggaacaccccaaagtttactaacgtggaagcgttatctggaacattggaaacaacagggg
agaccctcagaacatattgaatggttatatgaaaggtcctgcttacagtttaaagataat
caagacgtttgggaggagtacctaaagtggcttctccaaaactggaaggatacacacgaa
actaccgcaagtgattattggcgaatagctaatgtttttaaacgatgtattaatgctgcc
aatgggaaaccgtttctcaacgtaagtttactatttttggaatttgcaatggagcaacgt
gatttgaagttaatactagatacttttgatatgacgctgaagaatgtaaagacaaatgac
caaggcaaattatggaatctcattttaaagtttgttaatgaaaaattattatcgttaact
tttgctgaaagttccctcgatgatctagatgataaccaaaacgatcaactatttctcata
atatatcaggcggtctttgtctcatcaaatgtgacaaatgagctaaatgacgaggcaaat
atttgggcatctcatctcttagagaggtttattcaagtatgcaatgaaaaatcaatcaat
atggtcttgtcgtacttctataggacccaagatcataaacgtattaagagggtatatgaa
aaatatctgattagtaaatccaagaagtctagttcttggcttccgaacccgaaacttcct
taccaattgaatataaattatttgaatactcttgaggcacttcatagagacaaagaatat
gaagcatttatgggtgaaatgaggaagatatttcctgaagaatccaccaatttgatcata
atcctatgtagccactacgttaagagagctgaattccaaaagtttgaaaaatttattagt
gaatcgttaacaacaacaatttctctaaaagatttcactacaattttcaatttccaaatc
aatgtggaacaaatcttgatagaaactgtggtaaatgaattgaaagataacgaagattta
aaggacgacgaaaaatggaataatttattaaatgagcatcttaagatctttcaaaatttg
gttgatacacgtaaattgaagacaaatgatctgaaattaagacaagatccgaataatgtc
tcaacttggcaagaacgagtctcgttattcaaatctaataagcgaaaatgtgagattttt
acggaggctattctagcaattgatcctctcaaagtatcggtacctggatcatttgggaac
ctttggtgtgactatgcccaaatatattgggatgcaggtaactacgatgtagcacgagaa
atctacgatcgtgccttaaaagtgccatttccctttctggatgatttaacaaatatatgg
acagaatgggtagagaaagagttggatttagaaggaattgagaaaccaatacaattatta
gaacatgccctagaggctccagaacatcctacggtagtgattgaaagatttaagaatggg
cacggaaaagtcccagcccaaacagttgtgttcaactcatcaaaattatggagcatatat
atcgatcttctggagacgttagcattatctgaagagggtgatgaaatggcagttgcaaaa
gtgattaaagcatatgagcaaacaatcaagctgaaagtgataacaccactacgcttcatc
aattattcccattttctgcaacatcataatatgattatggaatcatatcaaatatatgaa
cgggcaattccactctttacagcagaaacacagtatgaattatggaatatctatttagca
gaagtagtgaaccctttgtcaccgttatcaaaggagcacattcgtgaattattcgagcat
gcaattagaacattgttgccatttggtattgattgtaaatcgattttcatcttgtacagt
gattttgaagagaagcaaggtttactaaaaaggagtgtggatattttgtggaaaggagct
caaacgaatggccaaggaacaattcatttaaagagtaggcttggtctttggaatttatgt
ctctttaaagcacagagtcatttaggactttctgtttcgagacaaatatatgaagattgt
atccaacaggtcccaaactccaagtcagcaccttacattataggttttgcagatgcagag
actagtggtggtgagattacacgttctagggaaatattggaatacggtgcaagactgatt
ccaccagccaagaacacatcattgtggaattattgggaaaccttcgaattaaagcatggt
gacaaagaaacttataaggatatgctaaaacttaaacggaaattggatgttgaaatgcgt
gtagataccgagcaagttaccacaaacgacggaaacgtacagtttgttgcctctactgcc
accacagagaagacgaaggatattttgaatacagaggagatcgaattagatatttaa
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