Naumovozyma castellii: NCAS_0A13900
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Entry
NCAS_0A13900 CDS
T02233
Symbol
NCAS0A13900
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ncs
Naumovozyma castellii
Pathway
ncs03020
RNA polymerase
ncs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCAS_0A13900 (NCAS0A13900)
09124 Replication and repair
03420 Nucleotide excision repair
NCAS_0A13900 (NCAS0A13900)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncs03021
]
NCAS_0A13900 (NCAS0A13900)
03400 DNA repair and recombination proteins [BR:
ncs03400
]
NCAS_0A13900 (NCAS0A13900)
Enzymes [BR:
ncs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCAS_0A13900 (NCAS0A13900)
Transcription machinery [BR:
ncs03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
NCAS_0A13900 (NCAS0A13900)
DNA repair and recombination proteins [BR:
ncs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
NCAS_0A13900 (NCAS0A13900)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Card1_endonuc
Motif
Other DBs
NCBI-GeneID:
96901425
NCBI-ProteinID:
XP_003674328
UniProt:
G0V8Z9
LinkDB
All DBs
Position
1:2728572..2733722
Genome browser
AA seq
1716 aa
AA seq
DB search
MVSEQYSSAPLRTVKEVQFGLFSPEEVRGISVAKIRFPETMDETQTRAKIGGLNDPRLGS
IDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCESVCMHCGKLLLDEHNE
QMRQAMAIKDSKKRFNAVWTLCKTKMICETDVPSDDDPTTLISRGGCGNAQPSIRKDGLK
LVGSWKKEKNTSDGDEPEQRVLSTEEILNIFKHISPEDSTRMGFSEEFARPEWMILCVLP
VPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHV
ATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLE
LDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKR
AGDIQLQYGWKVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNA
DFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSAQSNKPCMGIVQDTLCGIRKLTLRDTF
IEFDQVLNMLYWVPDWDGVIPTPAVLKPKPLWTGKQVLSAAIPKGIHLQRFDEGTTLLSP
KDNGMLVIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPTICARLFGNIQKIVNFWLLHN
GFSTGIGDTIADGQTIKEITETIAEAKKKVEDVTKEAQANLLTAKHGMTLRESFEDNVVR
FLNEARDKAGRLAEVNLNDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIGFGFV
DRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRR
LVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGIDAAHIEKQTLDTIGGSDVAFERRYRID
LLNPEHSLDPTLLESGSEIAGDLKLQALLDEEYKQLVEDRRFLREIFVDGESNWPLPVNI
RRIIQNAQQTFRIDHSKPSDLTIRDIVFGIKELQEHLLVLRGKSEIIEKAQSDAITLFCC
LVRSRLATRRILQEYKLTKQAFQWVLNNVESQFLRSVVHPGEMVGVLAAQSIGEPATQMT
LNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLKDGYSSDQEKAKFIRSAIEH
TTLKSITVASEIYYDPDPRSTVIPEDDEIIQLHFSLMDDETEQSLDRQSPWLLRLELDRA
AMNDKDLTMGQVGERIKETFKNDLFVIWSEDNAEKLIIRCRVVRPKSLDAETEAEEDHML
KKIENTMLENITLRGVENIERVVMMKYDRKVPSATGEYEKVPEWVLETDGVNLSEVMTVP
GIDATRIYTNSFIDIMEVLGIEAGRAALYREVYNVIASDGSYVNYRHMALLVDVMTTQGG
LTSVTRHGFNRASTGALMRCSFEETVEILFEAGASAELDDCRGVSENVLLGQMAPIGTGA
FDVMIDEESLVKYMPEQKITELEDEQDGGATPYSNESGLVNTEIDVKDEMMFSPLVDSGT
TEAMDGGFTEYGGVSSPFGAYGDGPSSPGFGDVSSPGFSPTSPAYSPTSPSYSPTSPSYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPTYSP
TSPSYSPNAGNYSPGSPANSPNEEEKKDKNKNEDSS
NT seq
5151 nt
NT seq
+upstream
nt +downstream
nt
atggttagtgaacaatattcaagtgctcctctacgtacagttaaggaagtgcagtttggg
ttgttctccccagaagaagttcgtgggattagtgtagcaaagattagatttccagaaaca
atggacgaaactcaaacaagagccaaaatcggtgggctaaatgatccaagactaggttcc
attgatcgtaatttgaaatgtcaaacctgtcaagagggtatgaacgaatgtcccggtcat
tttggtcatattgatttagctaaacctgttttccatgttgggttcatcgccaagattaag
aaagtttgtgagtccgtttgtatgcattgtggtaagttactattggatgaacataatgaa
cagatgagacaagcaatggccattaaagattctaaaaaaagattcaatgctgtgtggact
ttatgtaaaactaaaatgatttgtgaaacagatgttccatccgatgatgatccaacaaca
ctgatatcaagaggtggttgtggtaatgctcaaccctctatccgtaaggatggtttgaaa
ttagtgggtagttggaaaaaagagaaaaatactagcgatggtgatgaacctgaacaaaga
gttttaagcactgaagagattttgaatattttcaaacatatttcaccggaagattctaca
agaatgggatttagcgaagagtttgctcgtccagaatggatgatcttatgtgtcttacca
gtgcctccaccacctgttcgtccatctatttcctttaatgaatctcaaagaggtgaagat
gatttaacatttaaactggctgatattttgaaggcgaatattagtttagaaactttagaa
cacaatggtgcccctcatcacgcaattgaagaagccgaaagtctgcttcaatttcatgtt
gcaacatatatggataatgatattgcaggtcagccacaagctcttcaaaaatctggtcgt
ccggttaaatctatccgtgctcgtttaaagggtaaggaaggtcgtattagaggtaatttg
atggggaagcgtgttgatttctctgcaagaacagtcatttcaggtgaccctaacctagaa
ttagatcaagttggtgtaccaaaatctatcgcaaggactcttacgtacccggaggttgtt
actccatataatattgatcgtctaacacaactagtccgtaatggccctaatgaacatcct
ggtgccaaatatgttattcgtgacaacggggatcgtattgacttaagatatagcaaaaga
gcgggtgatatacaactacaatatggctggaaagttgaacgtcatattatggacgatgat
cctgttctgtttaaccgtcaaccttctttacataaaatgtccatgatggctcacagagtc
aaagttattccatattctacatttagattaaatctgtctgtcacttccccatataatgcg
gatttcgatggtgatgaaatgaatttacatgttccacaatcggaagaaacaagagcagaa
ttatctcagttatgcgcagttccacttcaaattgtttcagctcaatcaaataaaccttgt
atgggtattgtgcaagatactttatgtgggattcgtaaacttacattaagagatactttt
attgagtttgatcaagtgttaaacatgttatactgggttcctgattgggatggggtcatt
ccaacaccagctgtcctgaaaccaaaaccattatggacgggtaaacaagttttatctgcc
gccattccaaagggtattcatttgcaacgtttcgatgaaggaacaactttattatcaccc
aaagacaatggtatgttggtcattgatggtcaaatcatatttggggttgttgataagaag
acagttggttcatcaagtggtgggctgattcatgttgtcacaagagaaaagggtcctact
atttgcgcgagattatttggtaatattcaaaaaattgtcaatttctggcttctacacaat
gggttttccacaggtattggtgatacaattgccgatggacaaactattaaggaaatcact
gaaactatcgctgaagctaagaagaaggttgaagatgttaccaaagaagctcaagcaaat
ttactaacggctaagcatggtatgacacttcgtgagtcttttgaagataacgttgttcgt
ttcctaaatgaagcaagagataaagctggtcgtttagccgaagttaatctaaatgatcta
aataatgtgaaacagatggttagcgctggttccaagggttcctttattaatattgctcaa
atgtctgcttgtgtcggtcaacaatctgttgaaggtaaacgtattgggtttgggttcgtt
gatcgtaccctaccccatttctctaaagatgattactcaccagaatccaagggttttgtg
gagaattcttacttgagaggtttgacaccacaagagtttttcttccatgctatgggtggt
cgtgaaggtcttatcgatactgctgtgaagacagctgaaacaggttatattcaacgtcgt
ctagttaaagctctggaggatatcatggtacattatgatggtacaacgagaaactctttg
ggtaatgttattcaattcatatatggtgaagatggtattgatgctgctcatatcgaaaag
caaactttagacaccataggtggctcagatgttgccttcgagagaagatatagaattgat
ctgttgaaccctgaacattcattggacccaacattacttgaatctggatccgaaattgcc
ggtgacttaaaattacaagctcttttggacgaagaatacaaacaattagtcgaggaccgt
agatttttaagagaaatatttgttgacggtgaatcaaattggccacttcctgttaatatc
agacgtatcatccaaaatgcacaacaaactttcagaattgatcattcaaaaccatcagat
ctaacgatccgtgatatagtatttggtatcaaagaattacaagagcatttgctagtttta
cgtggtaagagtgaaattattgaaaaggctcaaagtgatgctattacactattttgttgt
ttagttcgttcgcgtttggccactcgtagaattctacaagaatacaaactaacgaagcaa
gctttccaatgggtgttaaataatgtggaatcacaatttttacggtccgtcgttcatcct
ggtgaaatggttggtgttttagctgcgcaatccatcggggaacctgcaacacaaatgaca
ttgaatactttccattttgctggtgtggcttctaaaaaagttacttccggtgttcctcgt
ttaaaggaaattttaaacgttgctaaaaatatgaaaactccatccttgacagtttattta
aaggatggttattcatctgaccaagagaaggcaaagtttatcagatctgctatcgaacat
accactttgaagagtattactgttgcatctgaaatttactacgatcctgatccacgttct
acagtcattcctgaagatgatgaaattattcaattacatttctcgttaatggatgatgaa
acggagcaatcgttagatagacaatctccatggttattgcgtttagaattagatcgtgcc
gccatgaacgataaagatttaactatgggtcaagttggtgaaagaataaaagaaaccttt
aagaatgatttgttcgttatctggtctgaagataatgctgagaaattaattattcgttgt
cgtgttgttcgtccgaagtcgttggatgccgaaactgaagccgaagaagatcatatgttg
aagaagatcgaaaacaccatgcttgaaaatattacactacgtggtgttgaaaacattgaa
cgtgtggttatgatgaaatatgaccgtaaagtacctagtgctactggtgaatatgagaag
gtaccagaatgggtgttagaaactgatggtgtcaatttatcggaagttatgactgttccg
ggcattgatgctacaagaatatacacaaactctttcatagatatcatggaggttcttggt
attgaagctggtcgtgcggccctatacagagaagtctataacgtcattgcatctgatggt
tcgtacgttaattaccgtcacatggcattattggttgacgtcatgacaactcaaggtgga
ctaacttctgttactcgtcatggttttaacagagcttcgacaggtgcgttgatgagatgt
tcttttgaagaaactgttgaaattctattcgaagcaggtgcatcggctgaattggatgat
tgtcgtggtgtctctgaaaatgtgctattgggccaaatggctcctattggtacaggtgcg
tttgatgtcatgattgatgaagagtctctagtgaagtacatgccagagcaaaagataacg
gagctagaagacgaacaggatggtggtgctactccatatagtaatgaaagtgggttggtt
aacactgaaattgatgtcaaggatgaaatgatgttctcaccattagtcgattcgggtaca
actgaagccatggatggaggatttactgaatatggtggtgtatcatctccattcggtgct
tatggtgatggtccatcatcgcctgggtttggtgatgtttcatcacctggattctctcct
acatctccagcctactcgccaacatccccaagctatagcccaacatctccatcatattct
cctacatctccatcatactcgccaacatctccatcatactcaccaacatcaccaagttat
agtccaacatcaccctcctactctcctacatctccaagctacagtcctacatctccatcg
tattcaccaacctcaccttcatattccccaacctctccaagttatagccctacatctcca
agctacagtccaacttctccatcttattcaccaacttcaccttcatattctccaacatca
ccaagttatagccctacttcgccaagttatagcccaacatcaccatcatattcccccaca
tccccaagctatagtccaacttctccatcctattctccaacttcacccacatacagccct
acttctccttcatactctcccaatgctggtaactacagtccaggatcacctgctaactca
cccaacgaagaggagaagaaagataagaataagaacgaagattcttcataa
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integrated database retrieval system
