KEGG   Naumovozyma castellii: NCAS_0A14510
Entry
NCAS_0A14510      CDS       T02233                                 
Symbol
NCAS0A14510
Name
(RefSeq) U6 snRNA complex subunit LSM4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
ncs  Naumovozyma castellii
Pathway
ncs03018  RNA degradation
ncs03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ncs00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    NCAS_0A14510 (NCAS0A14510)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NCAS_0A14510 (NCAS0A14510)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ncs03019]
    NCAS_0A14510 (NCAS0A14510)
   03041 Spliceosome [BR:ncs03041]
    NCAS_0A14510 (NCAS0A14510)
Messenger RNA biogenesis [BR:ncs03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     NCAS_0A14510 (NCAS0A14510)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     NCAS_0A14510 (NCAS0A14510)
Spliceosome [BR:ncs03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    NCAS_0A14510 (NCAS0A14510)
SSDB
Motif
Pfam: LSM SM-ATX Avl9 DUF6176
Other DBs
NCBI-GeneID: 96901485
NCBI-ProteinID: XP_003674388
UniProt: G0V959
LinkDB
Position
1:2859919..2860467
AA seq 182 aa
MLPLYLLTNAKGQQMRVELKNGEIVEGKLTNVDNWMNLTLSNVSEYKSSDTIATPQTEVV
KSTEIYVRGTFIKYINLQDDIIDIVKQQINNNMNNSNRDRKYQNNRYPSSGSRGNYRRDG
NYSGGNRRNYNNNNQGNRRSYNQYNNQNKPNSSAMGGYVQQHTENNANYRHDGSHSNQNV
EF
NT seq 549 nt   +upstreamnt  +downstreamnt
atgttaccgctgtatttgcttactaacgcaaagggccaacaaatgcgtgtggaattgaaa
aatggggaaatagtagaaggtaaactaactaacgttgataattggatgaatttgacttta
tctaatgtcagtgaatataagagttctgatacaattgctactcctcaaactgaagttgta
aaatctactgagatttatgttagaggtacgtttatcaaatatattaatctacaggatgat
atcattgacattgtaaagcaacaaattaataataatatgaacaatagcaatagagacaga
aaatatcagaataatagatatccttctagtggaagtagaggtaattataggagagatggt
aattatagtggtggcaataggagaaattataacaacaacaatcaaggtaaccgtcgttcc
tacaaccaatataataatcaaaataaaccaaatagtagtgccatgggcggttatgttcaa
cagcacactgaaaacaatgcaaactatagacatgatggtagccattcaaaccaaaatgta
gaattctaa

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