Naumovozyma castellii: NCAS_0B06540
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Entry
NCAS_0B06540 CDS
T02233
Symbol
NCAS0B06540
Name
(RefSeq) RSC chromatin remodeling complex ATPase subunit STH1
KO
K11786
ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-]
Organism
ncs
Naumovozyma castellii
Brite
KEGG Orthology (KO) [BR:
ncs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncs03021
]
NCAS_0B06540 (NCAS0B06540)
03036 Chromosome and associated proteins [BR:
ncs03036
]
NCAS_0B06540 (NCAS0B06540)
Transcription machinery [BR:
ncs03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SWI/SNF complex
NCAS_0B06540 (NCAS0B06540)
RSC complex
NCAS_0B06540 (NCAS0B06540)
Chromosome and associated proteins [BR:
ncs03036
]
Eukaryotic type
Chromatin remodeling factors
RSC complex
NCAS_0B06540 (NCAS0B06540)
SWI/SNF complex
NCAS_0B06540 (NCAS0B06540)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Bromodomain
HSA
ResIII
HDA2-3
SnAC
DEAD
Motif
Other DBs
NCBI-GeneID:
96902295
NCBI-ProteinID:
XP_003675109
UniProt:
G0V9X1
LinkDB
All DBs
Position
2:complement(1237947..1241975)
Genome browser
AA seq
1342 aa
AA seq
DB search
MLEATTVTASPVSQVNFKLDSNSNNTETEKSIPNFSIPKPESKNHLEQLIYRYRAIQEQP
KANKFEIGLLEKTFSDISHEQDEYIEKLNDIRSDANIKQSKYDKAVLQRQLLALQFLERD
MDIPDGILLDDDKMQDAKDAQDTSDVLKPIKLTFDFNENARSLGLLDKFSNITKTDLGKQ
ETENLISKQIAQRIKELERLPANLGSYSLDDCLEFLTKSDLPSNIDNLKIRALIELKSLK
MLTKQKSLRQKLINNVTGQAHHSIPYLRDSPFTIAAQRSVQIRPKVIVPQTVRLAEELER
QQLLEKRKKERNLHLKKIYSIIDFVQENQNSTFNHRDRCAQFGKICQSVHSQIEKDEQRR
IERTAKQRLQALKSNDEEAYLKLLDQTKDTRITQLLRQTNSFLDSLAQAVRVQQNEAKLL
RGEEIPPITDEEREKTDYYEVAHQIKEKIDKQPSMLVGGTLKEYQIRGLEWMVSLYNNHL
NGILADEMGLGKTIQSISLITYLFEEKKDPGPYLVIVPLSTITNWTLEFEKWAPSLNTVI
YKGTPNQRRNLQHQVRIGNFDVLLTTYEYIIKDRALLAKHEWTHMIIDEGHRMKNAQSKL
SYTITHYYKTRHRLILTGTPLQNNLPELWALLNFVLPKIFNSAKTFEDWFNTPFANTGTG
EKLELTEEETLLVIRRLHKVLRPFLLRRLKKEVEKDLPDKVEKVVKCKLSGLQQQLYEQM
LKHNALFLGEGTEGATKSGIKGLNNKIMQLRKICNHPFVFDEVEGVINPTRANSNLLYRV
SGKFELLNRVLPKFKAAGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKADDRTGM
LNDFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNE
VRILRLITTDSVEEVILERAMQKLDIDGKVIQAGKFDNKSTAEEQEAFLRRLIENESTKD
NDDDAELDDDELNEMLARNEDEKILFDKIDKERTKEERREAKAEGLSAPLPRLIQVDELP
KIFTEDISDHLKEEPVAEGRIRKMKRVYYDDGLTEEQFLEAVENEDETLEGAIQKRREAR
ERRQRSKQEKDLGIRTLENTPEVDAAIPDDKVENEDLPDGPEEPAIPQEPKRKTRKRKAK
EAVEHVEHDASLENHDETSISEATENKRPKLKIKLTMKRGKKEESVSSNDADQLNGNGKG
TINEDVEPEKTSNKVNNTKAKGKKAKKSLASECTPVVEKLLAIMREQLDDTDGHPLTGIF
EQLPSKKLYPDYYVIIQNPMALETILRKCKRGEYKNLSEVKEDMQTMFNNARFYNEEGSW
VYNDADKLNEFVNQWFKDHQEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atgttagaagcaacaacagtaacagcaagccctgtaagccaggtaaatttcaagcttgac
agcaatagtaacaatactgaaacagagaagtcaataccgaacttttcaatacccaagccg
gaatctaaaaatcacttagaacaactgatttacagataccgtgctattcaagaacaacct
aaagcaaataaatttgaaatcggattattagaaaaaaccttctctgatatctctcatgag
caagatgaatacattgaaaagttaaatgacattagaagtgatgcaaatattaagcagagt
aaatatgataaagcggttctgcaaagacaattattagccttacaatttctagaaagagat
atggacattcctgatggaattttactcgatgatgataagatgcaagatgctaaagatgct
caagatacctctgatgttttaaaaccaatcaaactaacctttgatttcaacgaaaatgct
aggagtctaggactacttgataaattctcaaacataactaaaaccgatctaggtaaacag
gaaaccgaaaatttgatttcaaaacaaattgcacaaaggattaaggagttggaaagacta
cctgcaaacctaggttcttattcactggatgattgcttggaatttcttaccaaaagcgat
ctaccatcaaacatcgataatctaaaaattagagctctaatcgaattgaaaagtctaaaa
atgctaaccaaacaaaagtctttaagacaaaagttaattaacaatgttacaggacaggca
caccattctattccatatttgcgtgactctccatttaccatagctgctcaaagatctgtt
caaattagacctaaagttattgtgccacaaacagtaagattggctgaagaattagaaaga
caacaactactagagaagcgtaagaaggaaaggaacttgcatctaaagaaaatctatagc
attattgattttgtgcaagaaaatcaaaattctacatttaatcatcgtgatcgttgcgct
cagtttggtaaaatatgtcagtcagtacatagtcaaattgaaaaagatgaacagagaaga
attgaaagaaccgcaaaacaacgtttacaagctttgaaatctaacgatgaagaggcatat
ttgaaattattggatcaaacaaaagatacaagaattacccaattattgagacaaacgaat
tcatttttggattccttggcacaagcagtcagagtacaacaaaatgaagcaaaattattg
aggggtgaggagattccacctattacagatgaagaaagagaaaaaactgattattatgag
gtagctcaccaaatcaaagaaaaaattgacaaacaaccttctatgcttgttggtgggacc
ctaaaggaatatcaaatccgtggtttagaatggatggtctcattatacaataaccatcta
aacggtatccttgccgatgaaatgggtttaggtaagactatccaatctatctctcttatt
acttacctatttgaggaaaagaaggatcctggtccatacttagtaattgttccattatca
actattactaattggacactagaatttgagaaatgggccccatcattgaataccgtaatt
tataaaggtacaccaaatcaaagacgtaatctacagcatcaagttagaattggaaatttc
gatgtcttgttgacaacttacgaatatatcattaaagaccgagcattattggctaagcat
gaatggacccatatgattatagatgaaggtcatagaatgaagaatgcccagtcgaagtta
tcttatactattactcattattacaagacgaggcatagattaattttaactggtacacca
ttgcaaaataatttaccagaattatgggcattattaaattttgttctacccaagattttc
aattcggcaaagacatttgaagattggttcaacacaccatttgctaatactggtactggt
gaaaagttagaattgacagaagaagaaacgttgttggttattcgaagattacacaaagtg
ttaagaccattccttcttcgtcgtttgaagaaggaggttgaaaaggacttacctgataaa
gttgaaaaagtggtcaaatgtaaactttctgggttacaacaacaattatatgagcaaatg
ctaaaacataatgcattattccttggtgaaggtactgaaggtgccacaaagagtggtatt
aagggtttgaataataagattatgcaactgagaaagatatgtaatcatccatttgtcttc
gatgaagtcgaaggtgttattaatccaacaagagccaatagtaatctattgtacagagtt
tctgggaaatttgaactattaaatcgtgtcttacctaaatttaaggcagcaggccataga
gttctaatgttcttccaaatgacacaagttatggatatcatggaagatttcttgagaatg
aaagatttgaagtatatgaggttagatggtagtactaaagctgatgacagaaccggtatg
ttaaatgattttaatgcaccagattctgattacttctgtttcctactgtctaccagagca
ggtgggttaggtttaaatcttcaaacagccgatacagtcattatcttcgatacagattgg
aatccgcatcaggatttgcaagcacaagatagagctcatagaattggtcaaaagaatgaa
gttagaattttaagattaattacgactgattccgtggaagaagttattctcgaaagggct
atgcagaagctggatattgatggtaaggtcattcaagctggtaaatttgataacaaatct
actgctgaagaacaagaagcattcttgagaagattgattgaaaacgaatccactaaagat
aatgatgacgatgctgaattagatgatgacgagttaaatgaaatgttagctcgtaatgaa
gatgagaaaattcttttcgataagatagataaggaaagaacaaaagaggaaagacgtgag
gctaaagctgaaggactttctgctcctctgccaagacttatccaagttgatgaacttcca
aagatttttactgaagatatttctgatcatttgaaagaagaacctgttgctgaagggaga
ataagaaagatgaaacgagtatattacgatgatgggttaactgaagaacaattcttagaa
gctgtggaaaatgaggatgaaacactggaaggcgctattcagaagagaagggaagctcgt
gaaaggagacaacggagcaagcaggaaaaggatcttggaataagaacattagaaaatacc
cctgaagttgatgctgctatccctgatgataaagtcgaaaatgaagatttacccgatggg
ccagaagaaccagcaattccccaagaacccaaacgtaaaacaaggaaaaggaaggcaaag
gaagctgtggagcatgttgagcatgatgcttcattagaaaatcacgatgagactagtatt
tcagaagctactgaaaataaaagacccaagttgaagataaagctcacaatgaaaagaggg
aagaaagaagaatctgtgtcttctaatgatgctgatcaacttaacggcaatggtaaagga
actattaacgaagatgttgaaccagagaaaacctctaacaaagttaataatactaaagcg
aagggaaagaaagcaaagaaatcattggcatctgagtgcacacctgtagtcgagaaactg
ttagctatcatgcgtgaacagcttgatgataccgacggtcatccccttacagggatcttc
gaacaattgccatccaagaagttatacccagattattatgtcattattcaaaatccaatg
gcattggaaaccattttaaggaaatgtaagaggggtgaatacaagaatctttccgaggtt
aaagaagatatgcaaacgatgtttaataatgccagattttacaatgaagaaggttcatgg
gtctataatgacgctgacaaattaaacgaatttgtgaaccaatggttcaaagaccaccaa
gaagaataa
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