Naumovozyma castellii: NCAS_0C01390
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Entry
NCAS_0C01390 CDS
T02233
Symbol
NCAS0C01390
Name
(RefSeq) TFIIH/NER complex subunit TFB2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
ncs
Naumovozyma castellii
Pathway
ncs03022
Basal transcription factors
ncs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncs00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NCAS_0C01390 (NCAS0C01390)
09124 Replication and repair
03420 Nucleotide excision repair
NCAS_0C01390 (NCAS0C01390)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncs03021
]
NCAS_0C01390 (NCAS0C01390)
03400 DNA repair and recombination proteins [BR:
ncs03400
]
NCAS_0C01390 (NCAS0C01390)
Transcription machinery [BR:
ncs03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
NCAS_0C01390 (NCAS0C01390)
DNA repair and recombination proteins [BR:
ncs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
NCAS_0C01390 (NCAS0C01390)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
bPH_7
Motif
Other DBs
NCBI-GeneID:
96902713
NCBI-ProteinID:
XP_003675496
UniProt:
G0VCC0
LinkDB
All DBs
Position
3:254415..255965
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AA seq
516 aa
AA seq
DB search
MSTSVLKNSVTQYLEEIPQQVQTRLYESPATCLAIYRLLPQLAKFFVMSMVFNDKEVSLR
DLDRWVKSNGKMQFQDAIKSMKSLHLIIPSKSNGGPLMINLNPTFRESFKNALTGGQVDN
SFGIVADDDDDNGVVSLQLLDEYSANKWETILHFMVGTPMSSIPSASVLNLLKHTRLMEE
VDHTSEFKITNEGFQFLLQELNSQIWTLLLQYLKMSETLKMDSVDVLNFIFMLGALEVGK
GYSIDGLSETQKIMLKDMRDYGLVFQKYTNSNLFYPTNLALMLTSDTKSIVRTASGALES
VLQNKREDSSKQANGEINKDLITNGDELDQVGYNPQDIPDGSLIIETNFKLYSYSNSPLQ
IATLSLFVHLKSRFANMVTGQITRESIRRALINGITADQIIAYLETHAHPQMRRLAEERL
EKKLELDPNSKDPLQVLPPTVVDQIKLWQLELDRVITYEGSLYSDFETIAEYTTLSKYAQ
DIGVLLWKDDKKKKFFVSKEGNSQVLDYAKRKLKKK
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccagtgtattgaagaattcggttacccaatacttggaggaaattccacaacag
gtgcaaactagactttatgaatcaccagcaacgtgtttggccatttatagattactgcct
caactagctaaatttttcgtcatgtctatggttttcaatgataaagaagtctctttacgt
gatttagatagatgggtgaagtctaatgggaaaatgcaattccaagatgctatcaaatcc
atgaaatcattacatttgatcataccttcgaaaagtaacggaggtcccttaatgattaac
ttaaatccaacattcagggagagctttaagaacgcattgacaggtggtcaggtggataat
tcatttggtatagtagcagatgatgacgatgataatggagttgtttcattacaattattg
gatgagtattctgcaaataaatgggagacaattttacattttatggtggggactcccatg
tcaagcataccatcggcaagtgttttaaacctattgaaacatacaagactgatggaagaa
gtagatcatactagtgaattcaaaattaccaatgaagggtttcaattcctgttacaagaa
ttgaactctcaaatttggactttattattgcagtatttgaaaatgtctgaaacgttaaag
atggattctgtggatgttttgaactttatttttatgttaggtgcattagaagttgggaag
gggtacagcatagatggtctaagtgaaacgcaaaagataatgttgaaagatatgagagat
tatgggctggttttccaaaaatatacaaattcgaatttattctatcctaccaatttggct
ttgatgctaacatcagacactaagagtatagtgagaaccgcgtctggtgcactggagagt
gttttacaaaacaagagagaagacagtagcaaacaagcaaacggtgaaattaataaagat
cttattaccaatggagatgaactagatcaagttggatacaacccacaggatataccagat
ggctctcttattatagaaactaattttaaattgtattcgtattccaattcgccattgcaa
atagctaccctgagtttattcgttcatttaaaatctagatttgcaaatatggtgacgggt
caaataacaagagaatccattagacgagcattgattaacggtattaccgcggaccaaatt
atagcgtacctggaaactcatgcacatccacagatgaggaggttggctgaagagagactg
gagaaaaagttagagctggacccaaactctaaggatccgttacaagtgctgcctccaact
gtggttgatcaaattaaactatggcaattagaattagatagagttatcacctatgaggga
tcgttgtattcagattttgaaactatcgctgaatataccacactcagtaaatatgcccag
gatatcggtgttctgctgtggaaagatgacaagaagaagaagttcttcgtttccaaggag
ggaaattcacaagtcttggattatgctaagagaaagctaaagaagaaataa
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