KEGG   Naumovozyma castellii: NCAS_0C04450
Entry
NCAS_0C04450      CDS       T02233                                 
Symbol
NCAS0C04450
Name
(RefSeq) cleavage polyadenylation factor subunit PFS2
  KO
K15542  polyadenylation factor subunit 2
Organism
ncs  Naumovozyma castellii
Pathway
ncs03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ncs00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    NCAS_0C04450 (NCAS0C04450)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ncs03019]
    NCAS_0C04450 (NCAS0C04450)
Messenger RNA biogenesis [BR:ncs03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     NCAS_0C04450 (NCAS0C04450)
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_THOC3 WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR36-Utp21_1st Beta-prop_EML_2 WDR55 Beta-prop_WDR3_2nd WD40_Gbeta EIF3I Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_Aladin Beta-prop_IFT140_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR19_1st WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_WDR75_1st WD40_RFWD3 eIF2A Beta-prop_WDR41 WD40_MABP1-WDR62_1st NBCH_WD40 PEP5_VPS11_N Beta-prop_WDR35_TULP_N Beta-prop_DCAF4 Beta-prop_Vps41 Beta-prop_SPT8 WDR54 Beta-prop_Nup120_160 Beta-prop_SCAP WD_LRWD1 Beta-prop_HPS5 Beta-prop_NOL10_N Beta-prop_IP5PC_F Gp23
Other DBs
NCBI-GeneID: 96903016
NCBI-ProteinID: XP_003675799
UniProt: G0VD73
LinkDB
Position
3:912688..914073
AA seq 461 aa
MDQFSNISPNLPLPATQKKYVTHRRTVDVSSPFTRLYFYRKHGLSTTPVIEPETSYSADI
LPPDTYKGHSNHRIINLACKFTHLSSNKVKHVIPAITWTPEGRRLVVATYNGEFSLWNGT
SFNFESLMQAHDSAVSCIQYSHAGDWMCSGDADGGIKIWQPNFNMVKEFENAHTECIRDI
SFSNNDSKFVTCSDDNVLKIWNFSNGQVERTLSGHHWDIKSCDWHPEMGLIVSASKDNLV
KLWDPRSGQCISTIIKFKHTVLKTRFQPTRGNLLAAISKDKSCRVFDIRHSMKELMCVRD
EVDYMTLTWNPINESMFTVGNYDGAMKYFDLLQDLEGPSHVIPYAHDKCVTSMAYNPAGN
ILASASKDRTIRFWTRAKPVDPNAYDDPTYNNEKVNGWFFGINNNINAVREKTEHGAAPP
VLNSTDIPSNLTTTSSSTNTGDFSLPGLTSTTKTGALPGLG
NT seq 1386 nt   +upstreamnt  +downstreamnt
atggatcaattcagtaatatttcacctaatctcccgttaccagcaacacaaaagaaatat
gtaacgcatcgaaggacagtagatgtcagctccccctttaccagactctatttctatagg
aaacatggactctcgacaactccagtcatagaaccagaaacgtcatattcagcagatatt
ttaccaccagatacatataagggacatagtaatcatcgaatcattaacctggcttgcaaa
ttcacacatttaagttccaataaagtaaaacacgttattcctgctattacatggacacca
gagggaaggcgacttgttgttgctacgtacaatggtgaattctcattatggaatgggaca
tctttcaattttgaaagtttaatgcaagctcatgattcagcggttagttgtatacagtat
agtcatgctggggattggatgtgtagtggagatgccgatggaggtattaaaatatggcag
ccaaattttaacatggtcaaagaatttgaaaacgctcacacagaatgtattagagatatt
tcatttagtaataatgattctaaatttgttacatgttcggatgataatgttttgaagatt
tggaatttcagtaacggacaggtggagaggacgttatctggtcaccattgggatattaag
agttgtgattggcatcctgagatgggattaattgtctctgcttctaaagataacctggtt
aagttatgggatccaagatctgggcaatgtatttcaacgattatcaagtttaaacataca
gtactaaaaacaagatttcaaccaacgagaggtaacttactggcagccatatctaaagat
aaatcgtgtagagtatttgatataaggcactcaatgaaagaacttatgtgtgtaagagat
gaagtagattatatgactttaacatggaacccaattaatgaatcgatgttcacggtgggg
aactatgacggtgcgatgaaatattttgatttgctacaggaccttgagggaccatctcac
gtgataccgtatgctcacgacaaatgtgtcacatcgatggcatataatcctgcagggaat
atattggcaagcgcctcgaaggatagaacaattcgattttggacaagagctaaacctgtg
gatccaaatgcatatgatgatccaacatataataatgagaaagtcaatggttggtttttc
gggattaataataatattaacgctgtaagagagaaaactgagcatggtgcagcaccacct
gttctaaattccacggatattccatctaatttaaccaccacttcttcctcaacaaatacc
ggtgatttcagtttacctggcctgacatccaccaccaaaactggagccctcccgggattg
ggttaa

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