Naumovozyma castellii: NCAS_0D01400
Help
Entry
NCAS_0D01400 CDS
T02233
Symbol
NCAS0D01400
Name
(RefSeq) U4/U6-U5 snRNP complex subunit PRP8
KO
K12856
pre-mRNA-processing factor 8
Organism
ncs
Naumovozyma castellii
Pathway
ncs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
NCAS_0D01400 (NCAS0D01400)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncs03041
]
NCAS_0D01400 (NCAS0D01400)
Spliceosome [BR:
ncs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
NCAS_0D01400 (NCAS0D01400)
Complex C
U5 SnRNP specific factors
NCAS_0D01400 (NCAS0D01400)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
96903329
NCBI-ProteinID:
XP_003676084
UniProt:
G0VDT2
LinkDB
All DBs
Position
4:256106..263413
Genome browser
AA seq
2435 aa
AA seq
DB search
MSDLPPLPPPPPGMEDNNNTSPMSDSDSNSDSELPDLPPPPPPPSGFDDDLSLPPPPPPG
FMEHDDNEDLPSLPPPPPPPSGFEDRSLAELPPPPPPPLTLLQENDFIDHNKRRYESESN
SNDEEVNHAKQVGMNKKKKQKLGGVIHSNKVEMPPEHLRKIMEGHNEMASKRFDYDKRAF
LGALKYMPHAVLKLLENMPQPWEQVKEVKVLYHVTGAITFVNEIPRVIEPVYTAQWSTMW
ISMRREKRDRTHFKRMRFPAFDDDEPPLSYQEHIQPLEPLDSITLPLDNNDDQWVKNWLY
DPRPLAENSSNSIGVNGTSYKKWHLNLQTMANLYRLSTPLKDEILDNNYYYLFNKKAFLT
SKALNNTIPGGPKFEPLYPKEEEEDFTEFNSIDRIIFRVPIRSEYRIAFPYVYNSRPRSV
KIPWYSDPISCLTKNLEDVDIPAFFFDTSLNPITSVRNNNKTSSMKLENMENDKFTLPET
FTPLLADEDLVLPDTKDAISLFHAPYPFNRTSGRTIRAQDVSLIKKWYLQHPDEEYPVKV
RVSYQRLLKNYVANELHTVPASNSKKIKLLKNLRNTKYFQQTTIDWVEAGLQICSQGHNM
LNLLIHKKGLTYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLMRELLKIVKLLVDAHVQ
YRLGNVDAFQLADGIYYILNHLGQLTGIYRYKYKVMHQIRACKDLKHVVYYRFNKILGKG
PGCGFWQPAWRVWIFFIRGIIPLLERWLGNLLNRQFEGRSNEVVKTTTKQRVDAYYDLEL
RASVMNDILEMIPEGIRDTKARTILQHLSEAWRCWKANIPWDVPGMPEPIKNIIERYVKA
KADGWMSSAHYNRERIKRGAHVEKTVMKKNLGRLTRLWIKNEQERQQEKEKNGPEITPEE
ATSVFSTMVNWFEERSFAPIPFPPLTYKNDTKILVLALENLKDAYASKARLNAAEREELA
LIEEAYDNPHDTLNRIKKYILTQRVFKPVDITMMEHYQNISPVYAVDPLEKITDAYLDQY
LWYEADQRKLFPNWIKPSDAEIPPLLVYKWTQGINNLSNAWDVTKGQSTVLLETQLEELA
EKIDFTLLNRLLRLIMDQNIADYMTAKNNVALNYKDMSHVNKYGLLRGLQFSSFIYQYYG
LVMDLLILGPDRASDLAGPPTMPNEFMHFKSEEVEKRHPIKMYCRYLDKVYIVFQFDEKD
ADDLTEEYLAENPDPNFENAIGYNNKKCWPRDARMRLMRQDVNLGRAVFWEVQSRVPSSL
IVMDWSNSFASVYSKNNPNLLFTMCGFEVRILPKQRMDEVISTDEGVWDLIDETSKQRTA
KAFVKVSDDEIEKFDSRIRGILMAAGSTTFTKIASKWNTAVISLFTYFREATISSERLLD
VLVKAETRIQNRVKLGLNSKMPTRFPPAVFYTPKELGGLGMISASHILIPASDLSWSKQT
DTGITHFRAGMTHEDDKIIPTIFRYITTWENEFLDSQRVWAEYASKRQEAIQQNRRLAFE
ELEGSWDRGIPRISTLFQRDRHTLAYDRGHRVRKEFKKFSLERNSPFWWTNSHHDGKLWN
LNAYRTDVIQALGGIETILEHTLFKGTGFNSWEGLFWEKASGFEDSMQFKKLTHAQRTGL
SQIPNRRFTLWWSPTINRANVYVGFVVQLDLTGIFLHGKIPTLKISLVQIFRAHLWQKIH
ESIVFDICQILDGELDVLQIETVTKEAVHPRKSYKMNSSAADVTMNSVSEWEVSKPSLLH
ETNDKFNSVRTSKMWFDVQLRYGDYDSHDISRYVRAKFMDYTTDNVSMYPSPTGVMIGID
LAYNMYDAYGSWFSGLKPLVQNSMRTIMKANPALYVLRERIRKGLQIYQSNVQEPFLNSS
NYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSV
WAGQKRLSQLAKWKTAEEVSALVRSLPKEEQPKQIIVTRKAMLDPLEVHMLDFPNIAIRP
TELRLPFSAALSIDKLSDVVMKATEPQMVLFNIYDDWLESVSSYTAFSRLILLLRALKTN
EEKAKMIILADPTIPIKPHHLWPSFSNEQWINIESQMRDLILTEYGKKYNVNIAALTQTE
IKDLILGQNIKAPSVKRQKMAELEAARSGTQEGEENAGASTVMKTKSVNAQGEEIVVVTS
ANYENQTFSSKNEWRQSAIAASLLYLRLKNIYVSSEDFVEEKNVYVLPRNLLNDFIKLSD
IKIQIAGYLYGKSPADHPNIKEVKTIVLVPQLGNRRGVEMANLPGKHPHKYLEDMELLGW
VHTQSDENKFMSVNEVMTHARLFGDHDPNAIDLSMYSKPGSVSLAAYNLSEEGFLWGKEN
KDKIHETPEGFESRFTIDAQLLLSDRIMGNFIVPTSDVWNYTFMGTRFDPEMKYELKLAI
PLEFYNEQHRATHFIQFNEIQENTELEAEQQDPFA
NT seq
7308 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatttgcccccattaccacccccacctcccggtatggaggataacaacaataca
tctccaatgtcagattcagattcaaattcagattcagaattaccagacctaccacctcca
cccccacctcctagtgggtttgatgatgatttatcgttaccgcctcctccaccaccagga
tttatggaacacgatgacaacgaagatctaccgtccctaccacctccacctccaccacct
tcaggcttcgaagacagatcactggctgaattacctccccctccaccacctcctctaact
ttattacaagagaatgattttatagaccataataagagaagatacgagtccgaatccaat
tccaatgatgaagaagtcaatcatgccaaacaagtaggtatgaacaagaagaagaaacag
aaattaggtggtgttattcattcaaataaagtggaaatgccaccagaacatctaaggaaa
atcatggagggccacaatgaaatggcctctaagaggttcgactatgataaacgtgcattc
ttgggagctttaaaatatatgcctcatgcagtactgaaactacttgagaatatgccacag
ccatgggaacaagtgaaagaggtcaaagtcctttatcatgttacaggtgctatcactttt
gtcaatgagatccctagagtcatcgaacccgtttacactgcacaatggtccacgatgtgg
atcagtatgagaagagagaaacgtgatagaacacattttaagaggatgagattccccgca
tttgacgacgatgaaccgccactatcgtaccaggaacacatacaaccattggagccatta
gattcaataacattacctttagataacaatgacgatcaatgggtgaagaattggttatat
gatccacgtccactagcagaaaatagtagtaatagtattggtgtaaatgggacgtcgtat
aagaaatggcatttaaatttgcaaaccatggctaacctttatagactctccacgccttta
aaggatgaaattcttgataacaattattattaccttttcaacaagaaggcattccttact
tccaaagccttaaataataccattccaggtggaccaaaattcgaacccttataccccaaa
gaggaagaagaggattttactgaatttaactctattgatagaattatattcagagtaccc
attagaagtgaatatagaatagcgtttccatatgtttataattcaagaccgcgttctgtt
aagattccatggtacagtgatccaatttcatgcctgacaaaaaatcttgaagatgtggat
atcccagcattcttttttgacacctctctaaatccaatcacctcggtgagaaataataat
aagacaagcagcatgaaacttgagaatatggaaaacgataaatttacactacctgaaacg
ttcactcccctattagcagatgaagatttagttctaccagatacaaaggatgccatatca
ttattccatgctccatatccgttcaacagaacatctgggagaacaatcagagcacaagat
gtttcccttattaaaaaatggtacttacaacatcccgatgaagaatatcctgttaaggtg
agagtgtcataccaaagattattgaagaactacgtcgccaacgaactccatactgtgcca
gcgtcaaatagcaaaaaaattaaattattgaaaaacctccgaaatacaaagtacttccaa
caaacaaccattgattgggtagaagcaggattgcaaatatgttcacaaggccataatatg
ttgaatttattaattcacaaaaagggactaacatacttgcatttagattacaattttaat
ctgaaaccaacaaaaacgttaactacgaaggaacgtaagaaatcgaggttcggtaatgca
ttccatttaatgcgagaactactaaagattgtgaaattattagttgatgctcacgtgcaa
tacagacttggcaatgtagacgcgttccaactagctgatggtatttactacattttgaat
catctagggcaacttaccggtatataccgttataaatacaaagtgatgcatcaaattcgt
gcttgcaaggatttgaaacatgtggtctactatagattcaataaaatattaggtaaaggt
ccaggttgtgggttttggcaaccagcatggagggtgtggatatttttcataagaggtatt
attccgttattggaaagatggttaggtaacttacttaacagacagtttgaaggacgttct
aatgaagttgtaaaaacaactacgaagcaaagagtggatgcgtactatgatttggagtta
agggcttctgtcatgaatgacattctagaaatgataccagaaggcatcagggatactaaa
gcaagaacaatattacaacatctaagtgaggcttggagatgctggaaggcgaatattccc
tgggatgtacccggtatgccagaaccgattaaaaacatcattgaaagatatgtaaaagca
aaggctgacggatggatgtcatcagcccattataatcgtgaacgtattaaacgtggtgca
cacgttgaaaagacagtgatgaaaaagaatttaggaagattgacaagattatggatcaag
aatgaacaggaaagacaacaagagaaggaaaagaacggtccagaaattacacctgaggag
gctacttctgtattttctaccatggtaaactggttcgaagaaagaagttttgcaccaatc
ccgttccctcctttaacatataagaatgacacaaaaatacttgtactcgccttggagaac
ttaaaggatgcatatgcatccaaggctcgactaaatgcggcagaaagagaagaattggct
ttgattgaagaagcatatgataacccacatgataccttgaatagaatcaagaaatatatc
ttaacacagcgtgtgtttaagccggtggatataacaatgatggaacactatcaaaatatt
tctcctgtctatgcagttgatcctctagaaaaaatcacagatgcctacttagatcaatat
ctatggtatgaagctgatcaaaggaaattgtttccaaattggatcaaaccaagtgatgca
gaaataccgcctcttcttgtatacaaatggacacaaggtataaataacctttcaaacgca
tgggatgttactaaaggccaatcgacggttttgctggaaactcaattagaagaactggct
gagaagatcgattttactcttcttaatagactactaagactaataatggatcaaaatatt
gctgattatatgactgcaaaaaataatgtggcactcaattataaagatatgagtcatgtt
aacaagtatggattattaagagggctacaattttcatcctttatttatcagtattatggt
ctcgtaatggatcttttgatattaggaccagatagagcatctgatttagcaggtccacca
acgatgcccaatgaatttatgcatttcaagagtgaagaggttgaaaaaagacatccaata
aagatgtattgccgctacctagataaggtttacattgtcttccaatttgatgaaaaagat
gctgatgacttaactgaggagtacctcgccgaaaatcctgatccaaatttcgaaaatgca
ataggctataataataaaaaatgttggccccgtgatgctcgaatgagactgatgcgccaa
gatgtaaacctgggcagagcagtcttctgggaagttcagagtagagtaccatcctcttta
atagtaatggattggagcaattcatttgcgtcggtatatagcaagaataaccctaatctt
ctatttacaatgtgtggatttgaagtgagaattttacctaaacaaaggatggatgaggtt
atttccactgatgaaggtgtttgggatcttattgatgaaacatcaaagcaaagaacagct
aaagcctttgtgaaagtatcagatgatgaaattgagaagtttgatagtagaataagaggc
attttgatggcggcaggctcgacaacatttactaagattgcttcaaaatggaataccgcc
gttatttctttgttcacctactttagagaagctaccatttcatcagaacgcttactggat
gttttggttaaggcagaaacgaggattcaaaatcgtgtgaaattggggttaaattccaaa
atgccaacacgttttcctccagcggttttctacacgccaaaggaattaggggggcttggc
atgattagtgcctcacacattctaattcctgcttccgatttaagttggtccaaacagaca
gacacaggtatcactcatttccgtgctggtatgacacacgaagacgataaaattatacca
accatattccgttacataactacatgggaaaatgaattcttggattctcaaagggtttgg
gcggaatatgcgtcgaagcgacaagaagctattcagcaaaatcgtagattggcgttcgaa
gagttggaaggatcttgggatcgaggaatccctcgtataagtaccctttttcaaagagat
agacatacgcttgcgtacgatagaggccatcgtgtacgtaaagaattcaagaaattttcg
ttagagagaaatagtccattttggtggactaactcacaccatgatggtaaactttggaat
ttaaatgcctaccgtaccgatgttatccaggcattaggcgggattgaaactattttggaa
catacgttgttcaaaggtacggggttcaactcttgggaaggtttattttgggagaaagcc
tctggttttgaagattccatgcaattcaaaaaactaacccacgcccaaagaaccggttta
agtcaaattccgaatcgtcgttttacgctttggtggtcaccaactatcaatagagctaat
gtttatgttggttttgtcgttcaattggatttgactggtatctttttacatggtaaaatc
ccaactctaaaaatctcgttggttcagatattccgtgcccatttgtggcagaaaattcat
gaaagtatcgtgtttgatatttgccaaatccttgatggtgaactggatgtgctccagatt
gaaactgtgacaaaagaggctgttcacccacgtaaatcatacaaaatgaattcatcagca
gctgatgttacaatgaatagtgtgtctgagtgggaagtttccaaaccttctttactacat
gagacaaacgataaattcaattcagtaagaacaagtaaaatgtggtttgatgttcaattg
agatatggggactatgactctcacgatatatctcgttatgtccgggccaaattcatggat
tacactacggataatgtaagcatgtatccttctccaacaggtgttatgattgggatagat
ctagcttacaatatgtatgatgcctatggtagttggtttagcggattaaagcctttggtt
caaaatagtatgagaaccataatgaaagcaaatccggcattgtacgtgctccgtgaacgt
atcagaaaaggtcttcaaatttatcaatcgaatgtccaagaaccattcttgaactcgtca
aattacgccgaattgtttaataatgacatcaaactttttgtggatgatactaacgtttat
agagttacagttcacaagacttttgaaggaaatgttgccacgaaagctatcaatgggtgt
atttttacgctaaatcctaaaaccggacatttattcctcaaaattattcacacatctgtt
tgggctggtcaaaaacgtttaagtcaacttgcaaaatggaaaactgcggaggaagtcagc
gctctagtaaggtctttacctaaggaagaacaacccaaacaaattattgttactcgtaag
gcaatgttagatccattagaagtccatatgcttgatttcccaaatatcgcgattagacca
acagaattaagattaccgttttctgcagcactatctatcgataagctatcagatgtagtc
atgaaggccacagaaccacaaatggtcctatttaacatttatgacgactggttagaaagt
gtttcttcatatacagcattttcaagattaatcctgttacttcgtgcgttaaaaaccaat
gaagaaaaggctaaaatgattatattagcagacccaaccatacctataaaaccacatcat
ctatggccatcattttctaacgagcagtggattaatatcgaatctcaaatgcgtgatcta
attttgacagaatacggaaagaagtacaacgtcaatattgccgctttgacccaaactgaa
attaaggatttaatattaggacaaaatatcaaggctccatctgtgaagagacagaaaatg
gcagagttagaagcagcaagatccggaactcaagaaggtgaagaaaatgctggagcctct
actgtaatgaaaacgaagagcgtcaatgctcaaggagaggaaatagttgtggttacatct
gcaaattacgaaaaccaaaccttcagttcaaagaatgaatggagacagtcagctatagca
gcaagcctgttgtatttacgtctgaaaaatatatacgtttcatctgaagatttcgttgaa
gaaaaaaatgtctatgttttaccaagaaatctattaaatgacttcatcaaattatcagat
attaaaatccaaattgcaggctatctctatgggaaatctccagcagaccatccgaatatt
aaagaagtcaagacaattgtgttggttcctcaattaggtaataggagaggtgtcgagatg
gctaatctgccaggtaaacatcctcataaatacttggaagatatggaactgttaggatgg
gtgcatacccaaagtgatgaaaataagttcatgtctgtaaatgaggttatgacacatgca
cgtctattcggtgaccacgatccaaatgcgattgatttatctatgtactctaaacctggt
tcagtgtctcttgcggcgtataacctttctgaagagggattcttatggggtaaagaaaat
aaagataaaattcacgagacgccagaaggttttgaatctaggtttacgatcgatgctcaa
ctattattatccgatcgtatcatgggtaattttattgtaccaacgtctgatgtatggaat
tatacgtttatggggacaagatttgatccagaaatgaagtacgaattgaagctggccatc
ccattagagttctataatgagcaacatcgtgcaacacattttatacaatttaatgagatc
caagagaatacagagttggaagcagaacaacaggatccatttgcctaa
DBGET
integrated database retrieval system
