Naumovozyma castellii: NCAS_0D01690
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Entry
NCAS_0D01690 CDS
T02233
Symbol
NCAS0D01690
Name
(RefSeq) U4/U6-U5 snRNP complex subunit LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
ncs
Naumovozyma castellii
Pathway
ncs03018
RNA degradation
ncs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
NCAS_0D01690 (NCAS0D01690)
09123 Folding, sorting and degradation
03018 RNA degradation
NCAS_0D01690 (NCAS0D01690)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncs03019
]
NCAS_0D01690 (NCAS0D01690)
03041 Spliceosome [BR:
ncs03041
]
NCAS_0D01690 (NCAS0D01690)
Messenger RNA biogenesis [BR:
ncs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
NCAS_0D01690 (NCAS0D01690)
mRNA degradation factors
5'-3' decay
Lsm complex
NCAS_0D01690 (NCAS0D01690)
Spliceosome [BR:
ncs03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
NCAS_0D01690 (NCAS0D01690)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
OB_POLE2
DUF1615
Motif
Other DBs
NCBI-GeneID:
96903357
NCBI-ProteinID:
XP_003676112
UniProt:
G0VDW0
LinkDB
All DBs
Position
4:complement(320145..320555)
Genome browser
AA seq
136 aa
AA seq
DB search
MNKTKPTQSNLRIIIKGKINRELTMSPLLKEYLNKKVVIITVEGQCFTANLEGFDKNTNL
MLSNVRDRFNHELITSVQLLRGSEVVVCGLLEEIEEGKKDVEDSGVIIPMVKLKDTKNRI
LNEHLIWEQVWKQKRK
NT seq
411 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagactaaaccaactcaatcaaacctgagaataataataaagggcaagataaac
agggagctaaccatgtcaccattactgaaggaatatttgaataagaaagtcgtgataata
actgtggaaggtcaatgttttacggcgaatttggaagggtttgataagaatacaaattta
atgctatctaacgttcgtgatcgatttaatcacgaattgatcacgtcggtacaattactt
cgaggaagtgaagtagtggtgtgtggcctactggaggaaattgaagagggtaagaaagat
gttgaggattctggcgtaataataccgatggtgaaattgaaagatacaaaaaataggata
ctaaatgaacatcttatttgggagcaagtatggaagcaaaaaaggaaatga
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