Naumovozyma castellii: NCAS_0D02890
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Entry
NCAS_0D02890 CDS
T02233
Symbol
NCAS0D02890
Name
(RefSeq) TFIIH/NER complex subunit SSL1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ncs
Naumovozyma castellii
Pathway
ncs03022
Basal transcription factors
ncs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncs00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NCAS_0D02890 (NCAS0D02890)
09124 Replication and repair
03420 Nucleotide excision repair
NCAS_0D02890 (NCAS0D02890)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncs03021
]
NCAS_0D02890 (NCAS0D02890)
03400 DNA repair and recombination proteins [BR:
ncs03400
]
NCAS_0D02890 (NCAS0D02890)
Transcription machinery [BR:
ncs03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
NCAS_0D02890 (NCAS0D02890)
DNA repair and recombination proteins [BR:
ncs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
NCAS_0D02890 (NCAS0D02890)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
Motif
Other DBs
NCBI-GeneID:
96903476
NCBI-ProteinID:
XP_003676231
UniProt:
G0VE79
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All DBs
Position
4:549465..550922
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AA seq
485 aa
AA seq
DB search
MAGAPVIPVVSDEDSESESQIVTGREKKKVVHFNNDDDADDEDAVPRVKTKRTHREDRDD
RPDTHDRDRNASRRRLSHNRKKKAASGNKNLLGANGGYAWEDEIKRSWDLVTVDEENDMA
SLVASIIEARKKRTAKKIVTPYQRGIIRTLILTLDCSEAMVEKDLRPTRHAMMIQYAIDF
IHEFFDQNPISQIGIVIMRNGLAHLVSQVSGNPQDHIDALKAIRKQEPAGNPSLQNALEM
ARGLLLPVPAHCTREVLIIFGSLSSTDPGDIHQTINSLVQEKIRVKVIGLSAQVAICKEL
CKATNYGDDSFYKILLDETHFKELFDEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPSFC
ACHSKLVYGGYFCPSCHSKVCSLPTVCPCCDLMLILSTHLARSYHHLMPLKTFVEVPATE
TFPTENCFSCQLVFPILKNQKTGKLLTSSRYRCDSCKKDFCIDCDVFIHEILHNCPGCES
KPTII
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggccggcgctcctgttatacctgtggtctcggatgaggattcagaaagtgaaagccaa
attgtcactgggagagaaaagaagaaagtggtgcattttaataacgacgatgatgctgat
gacgaagatgcagtcccacgtgtgaaaactaaaaggacacatcgtgaagatagggatgat
agacctgacacgcatgatcgagatagaaatgcatcgagacgaagattatcccacaatagg
aagaaaaaggcagcctcaggtaataaaaatctgctaggtgctaatggtgggtatgcctgg
gaagatgaaattaaaagatcatgggacttggtgactgtagatgaagaaaatgatatggcg
tctctcgtggctagtattattgaggcaaggaaaaagagaacggcaaagaaaattgtcaca
ccttatcaaagaggtatcattagaactttgatcttaactttggattgtagtgaggcaatg
gttgagaaggatcttagacccactcgtcatgctatgatgatccagtatgccatcgatttc
atccatgaattcttcgatcagaatccaatctctcaaattgggatagtaataatgaggaat
ggtctggctcatttagtaagtcaagtcagtgggaatcctcaggatcatattgatgctttg
aaagcaattaggaagcaagaacctgctggaaacccttctctacagaatgcattggaaatg
gcaagaggtttattgttaccggttcccgcccattgtacaagagaagtgttaataatattt
ggttctttatctagtacagaccctggggatatacatcaaaccataaattctttagttcag
gagaagatccgtgttaaagttattgggttatctgcccaggttgccatctgcaaagagtta
tgtaaggcgacaaactatggagatgattcattttataagatcctattagacgagacgcat
ttcaaagaactatttgatgaagccgttacccctctgccagtaaataaaattaataaagga
tttacccttgtgaagatggggttcccaacgagaatatttgaagatacacctagtttctgc
gcttgtcattcaaaattggtgtacggcgggtatttttgtcctagttgtcatagtaaagtt
tgttcattgcctactgtgtgcccctgttgcgatcttatgttaattctgtccacacatttg
gcaagatcatatcatcatctaatgcccctaaagacctttgtagaagttccagccacagaa
actttcccaacagaaaattgtttcagttgtcaattagtcttcccaatactgaagaatcaa
aagactgggaaactattaacaagttctcgatatagatgtgacagttgtaagaaagatttt
tgtattgattgtgatgtctttattcatgaaattcttcataattgtcctggttgtgaatct
aaaccaactattatttag
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