Naumovozyma castellii: NCAS_0D04180
Help
Entry
NCAS_0D04180 CDS
T02233
Symbol
NCAS0D04180
Name
(RefSeq) ATP-dependent DNA helicase SGS1
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
ncs
Naumovozyma castellii
Pathway
ncs03440
Homologous recombination
ncs03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ncs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NCAS_0D04180 (NCAS0D04180)
03460 Fanconi anemia pathway
NCAS_0D04180 (NCAS0D04180)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ncs03032
]
NCAS_0D04180 (NCAS0D04180)
03400 DNA repair and recombination proteins [BR:
ncs03400
]
NCAS_0D04180 (NCAS0D04180)
Enzymes [BR:
ncs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCAS_0D04180 (NCAS0D04180)
DNA replication proteins [BR:
ncs03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
NCAS_0D04180 (NCAS0D04180)
DNA repair and recombination proteins [BR:
ncs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
NCAS_0D04180 (NCAS0D04180)
Bloom's syndrome complex (BTR)
NCAS_0D04180 (NCAS0D04180)
FA (Fanconi anemia) pathway
NCAS_0D04180 (NCAS0D04180)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_Sgs1
Helicase_C
RecQ_Zn_bind
ResIII
HRDC
Rhodanese
TMEM192
Motif
Other DBs
NCBI-GeneID:
96903605
NCBI-ProteinID:
XP_003676360
UniProt:
G0VEK8
LinkDB
All DBs
Position
4:complement(788827..792861)
Genome browser
AA seq
1344 aa
AA seq
DB search
MSARTKPSHNLRREHKWLKETNVLQHDRDLVLQVINKNITHKRIRSTADAITKQASPNFA
GRNATNEADMIIPDSSSSIYQKDSNVVYSIDIDLEHNIPMLAPEQPLLPTITNMKPPQER
VVNSTRKVSATIISNNLTELNIAQSSSTKDELISLQEALIKKLKDQSNTFSRKCSIMEST
SLSEDNKKSQLSKEINPALIRLKSEISDLESRIEPLARKAKTESAHPIIESTGTPSNLQG
QMRSTEGLIEVLEDNDETSNEEPTILSQQSVIHNSIPTPPPQRPLRERHDRINYRIPEKD
DPFDYKLGKLDATIESTQHENTMDAEDDDASSYMTTRDEERDERLNQSDLEFVINDAPDQ
DAPYKDDSEGENIELINSSPLKELPMPAPTNDMVDHDEIINDSDEPIIDLLDEEDELDII
IEDSMPNLHNTRTNNINNTQLSISHSDLELINSDENEDDDEEDNLSDSDLEQFDEERENG
TQMVNIEELDNDLKIIAERKLQEDVAKDWSPVKIKNEPKDTFISPTKNKLLDFPDDDDDD
DDDDFSLLNEIASDHTKKNHNSTTSPRHPWSDEVDFKLHEVFKLPGFRSNQLEAVDATLS
GKDVFVLMPTGGGKSLCYQLPAVVKSGKTKGTTIVISPLISLMQDQVEHLLAKDIKACMF
SSKGTAEQRKQTFNLFIHGLLDLIYISPEMISASEQCKRAISKLHSDGKLARIVVDEAHC
VSNWGHDFRPDYKELKYFKREYPDVPMIALTATASEQVRMDIIHNLELKDPVFLKQSFNR
TNLYYEVKKKTKNAIFEIIDSIKTKFRNQTGIIYCHSKNSCEQTSDKLQRQGIKCAFYHA
GMEPDDRLKVQKAWQADEIQVICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAG
RDGKFSYCITYFSFRDVRTMQTMIQKDENLDRQNKEKHLNKLQQVMSYCDNMTDCRRKLV
LSYFNEDFDSKLCHKNCDNCKNSAHVITEERDITEISKKIISLVEAIQNDRVTLIQCQDI
VKGSRSSKIIQSGYTNLEQYGLGKKMSKSDIERIFFHLVTIRILQEYSIMNNGGFAASYV
KVGPNSKKLLDGKLDVAMQFTSSSSAGTRTPSSNEASRPSPSRMSSSRSEQMVPKPAFIS
AKQLSSFSYRGNNTEVARPISLQNNTESRSTQELIDITAAYNKLREVSLGLGNRMNPPVM
NFLSDVALKKLATILPVTPEQFSSIPSIGERQRKKFKYFKSTILNLRKNRRNISNNKDSI
VLSNGSSIPELNSQNSSGTKSHYFSLDPDEEQYNQAIVNQLRDAQFKSASNSAESTQLRP
KQNNYGSKRSYTNNYKSYNRKKKT
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccaggacgaaaccatcacataacttgcggagagaacacaaatggcttaaagag
acgaacgttttgcaacatgatagggatttggtcctgcaagtcatcaataagaacataaca
cacaagagaatacgatcaacggctgacgccattacgaaacaggcatctcctaattttgca
gggaggaacgctacgaatgaggcagatatgataattcctgacagctcttcgagcatctat
cagaaggactccaatgtcgtctattccattgacattgatctagagcataatattccaatg
ctggcaccggaacaacctttactgccgactattacaaacatgaaaccgcctcaggaacgt
gtggtaaattcgacaagaaaagtgagtgcgacgatcatatctaacaatttgacggaattg
aatatcgcacagtcttcgtccaccaaagacgaactaataagtttacaagaagctctaata
aaaaagctgaaggatcaatcaaacactttttcgaggaaatgctctataatggaatcaacg
tctctttcagaggataacaagaagtctcaactttccaaagaaataaatccagctttaata
cgactgaaatctgaaattagcgacttggaatcacgaatagaaccgttagcaaggaaagcc
aaaactgaatccgctcacccaattatagaatcaacaggaacaccgtccaacttacaggga
cagatgagaagcacggagggtctcatagaagtgcttgaagataatgacgaaacttccaat
gaagaaccaaccatactttcacaacaatcagtgattcataattctataccgacaccacca
ccacaacgacctctacgagaaagacatgatagaataaattacagaattcctgaaaaagat
gatccatttgattataaactggggaaactagacgcaacaattgaaagcactcaacatgaa
aatacaatggatgcggaagatgacgatgcctcaagttatatgacaactagggacgaagaa
agagatgaaaggttaaaccaaagtgatttggaatttgtcataaatgatgcacctgatcaa
gatgctccctacaaagatgattccgaaggggaaaatatagaacttattaattcatcacct
ctaaaggaattacccatgccagcacctactaatgacatggttgatcacgatgaaattatc
aacgatagtgacgagcccataattgacttgttggatgaggaagatgaattggatataatt
atcgaggatagtatgccaaatcttcacaacacaagaacgaataatatcaacaatactcaa
ttgtcaatatcacattctgatttggagcttattaatagtgatgaaaatgaagatgatgat
gaggaggataatttgtcagatagtgacttggagcaattcgatgaagaaagagaaaatggg
actcaaatggtaaatattgaggaactagataacgatttgaaaattatagctgagaggaaa
ttacaagaagatgttgccaaggattggtcaccagtgaaaatcaaaaatgaacctaaggat
acatttattagtccaaccaagaacaaattactcgattttcctgatgatgatgacgatgat
gacgatgacgatttttccttactgaatgaaattgcatccgaccacactaaaaaaaatcat
aattcaacaacctcaccaagacacccatggtcagatgaagtcgactttaaactgcatgag
gttttcaaattacctggatttagatcgaatcaattagaagcagtagacgccacgttaagt
ggtaaagacgtctttgtgttgatgcctacaggtggtggtaagtcgttatgctaccaatta
ccggccgtggttaaatcgggtaaaacaaaaggtaccaccatagttatttctccactaatt
tcactaatgcaagatcaagtggaacatctcctagcaaaagatattaaagcttgtatgttt
agttcaaaaggtaccgcagaacagaggaaacaaaccttcaatttattcattcatgggtta
ttggatctaatctatatatctccagaaatgattagcgcatctgaacaatgtaaaagggct
attagtaaacttcattctgatggtaaattagcacgtattgttgttgatgaggcacattgt
gtttccaattggggtcatgattttagaccagactataaagagcttaaatatttcaagaga
gaatatccagacgtgccaatgattgcattaactgcgacagcgagtgaacaagttcgtatg
gatattattcataatttagagttgaaagatccagttttcttgaaacaaagttttaataga
accaatctttactatgaagtcaagaaaaaaaccaagaacgccatttttgagattattgat
tctattaaaaccaagttcagaaatcaaactgggattatttattgtcattctaagaattcc
tgtgaacaaacctctgataaattacaaagacaaggtatcaaatgtgcattttatcatgca
ggtatggagccagacgatagattgaaagtacaaaaggcatggcaagctgatgaaattcaa
gtaatttgtgcgacagtggcattcggaatgggtattgataagcctgatgtccgatttgta
tatcattttaccgtcccacgtactttagaagggtattatcaagaaactggtcgtgcgggt
agagacggtaaattctcatattgtatcacttatttctcatttcgcgatgtaagaaccatg
caaacaatgattcaaaaggatgaaaacttggatagacaaaataaagagaaacatttgaac
aaattacaacaagtaatgtcgtattgtgataatatgacagactgtagaagaaaactggtt
ttatcatattttaatgaagattttgattctaaattatgtcacaaaaattgtgataactgt
aaaaatagcgcacacgttattacagaagaaagagatatcactgagatttccaaaaaaatt
atttctctggtggaagctatccaaaacgatagagttactctaatccaatgccaagacatt
gttaagggttcaagaagttcaaagatcatccaatcaggatataccaaccttgagcagtat
ggacttggcaaaaaaatgtcaaaatccgatatcgaaagaatcttttttcatttagtcacc
atacgtatacttcaagaatattcaatcatgaataatggtgggtttgcggcaagttacgtt
aaagttgggcccaattcaaaaaaattgctcgacgggaaattggatgttgcaatgcaattt
acatcatcttcctcagcaggtacaaggacaccttcatcaaatgaggcaagtagaccttca
cctagtcgaatgtcttcctcaagaagtgagcaaatggtccccaaacctgcatttattagt
gcaaaacaattgagctccttttcttatagaggaaataacacagaagttgcaagaccaata
tccttacaaaataacacagaatcaagatctactcaagagctaatagatataaccgctgca
tataacaaattaagagaagtgtcgcttggacttggtaatagaatgaatcctcctgtaatg
aatttcctctcagatgtagcattaaagaaattagctaccattcttccagttacccccgaa
caattttcgtctattccaagtataggagaaagacaacgtaagaaatttaaatatttcaaa
tcgacaatactgaatctcaggaaaaatagaagaaacatttccaacaataaggatagtatt
gtgttaagtaatggtagtagtatccctgaactgaactctcaaaattctagtggcacaaaa
tctcattactttagtttggatcctgatgaggaacagtataatcaagccattgtaaaccaa
ttacgtgacgcccaatttaaatctgcatcaaactctgccgaatcgacccaattacgcccc
aaacaaaataattatggatccaaacgttcatacacgaataattataaaagttataatcgc
aagaagaaaacgtag
DBGET
integrated database retrieval system
