Naumovozyma castellii: NCAS_0E00530
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Entry
NCAS_0E00530 CDS
T02233
Symbol
NCAS0E00530
Name
(RefSeq) SKI complex subunit WD repeat protein SKI8
KO
K12601
superkiller protein 8
Organism
ncs
Naumovozyma castellii
Pathway
ncs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCAS_0E00530 (NCAS0E00530)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncs03019
]
NCAS_0E00530 (NCAS0E00530)
Messenger RNA biogenesis [BR:
ncs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
NCAS_0E00530 (NCAS0E00530)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_Prp19
WD40_CDC20-Fz
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_HPS5
EIF3I
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
NBCH_WD40
WD40_MABP1-WDR62_1st
BBS2_Mid
Beta-prop_Nup120_160
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
96903756
NCBI-ProteinID:
XP_003676484
UniProt:
G0VF58
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Position
5:89654..90853
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AA seq
399 aa
AA seq
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MSKVFISTTNCGKAHDADIFKVAISIPFTITASGDGYIKLWKNKLLENEQPRDHYISQFI
NKTGVHHVDVFHSMEAENLELLIITCVSFSGEISFWQFDFNEKKLNRIELFDSPEWNKKS
FWAIKWLKSDDQVLSHRLAATDVKGTTYVWKFNPFPKDDGIENTDKTMTMSKLQLQGEMP
PPSAEAVFATCVDMSHNGLIATGFANGTIVVSQLSTLRPLYNFEGFGIQGIEQNSNTVRA
VKFSPAGSLLAVANDSGSFGCVALYETQFGERIGNLTVPTHSGQSSVESFAHSGWVFALS
FNSTGEFLATSGYDSKVRVWDVKSKERVTTLNITAGDIENEDDILLEDENGDSLKYPPVL
DVSFINKGIRSGMNSDVNEGLCCVCLDRSIRWYREAGGN
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaagtgtttatctctactacgaactgtgggaaggctcacgacgctgatattttc
aaagtagccatatctataccattcaccattaccgcctcgggtgatggatatatcaaacta
tggaagaataaactattggaaaacgaacaacctcgcgatcattacatatcacaatttatt
aataagacaggtgtacatcatgttgatgtgtttcattccatggaggcagagaatttggaa
ttgctaattattacttgtgtttcgttctctggtgagatatcattttggcaatttgatttt
aatgagaagaaattgaacaggattgaactgtttgattctcctgaatggaataagaagtca
ttttgggccatcaaatggctaaaatctgacgatcaagtcttgtctcatagattggccgct
actgatgtcaagggaactacttatgtctggaaattcaatcctttccccaaggatgatggt
atcgagaacacggataaaacgatgacaatgagtaagttacaattacaaggtgaaatgcct
ccaccttctgcagaagctgtatttgccacatgtgtcgatatgtctcataatggacttatt
gccactgggtttgccaatggtactattgtcgtttctcaattaagtacattaagaccatta
tacaatttcgaagggtttggcattcaaggaattgaacaaaatagtaatactgtacgtgcc
gttaagttttctcccgctggttcgctacttgctgtggccaatgactcaggttcatttggt
tgtgtcgctttatatgagactcaatttggagaaagaattgggaatcttactgtccccacg
catagtggacagtctagtgtggagtcatttgctcatagtggttgggtatttgccttgtca
tttaattccactggtgaattcttggctacttctggttatgatagtaaagtgagagtttgg
gatgttaaatccaaggaacgtgttactacccttaatatcacagctggtgatattgaaaat
gaagatgatattttgttggaggatgaaaatggtgattcattaaaatatccacctgtttta
gacgtctcgtttattaataagggtatcagaagtggaatgaatagtgatgtcaatgaggga
ttgtgttgtgtttgtttagatagaagtattagatggtatagagaagctggtggtaattaa
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