Naumovozyma castellii: NCAS_0F02230
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Entry
NCAS_0F02230 CDS
T02233
Symbol
NCAS0F02230
Name
(RefSeq) U2 snRNP complex subunit HSH155
KO
K12828
splicing factor 3B subunit 1
Organism
ncs
Naumovozyma castellii
Pathway
ncs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
NCAS_0F02230 (NCAS0F02230)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncs03041
]
NCAS_0F02230 (NCAS0F02230)
03036 Chromosome and associated proteins [BR:
ncs03036
]
NCAS_0F02230 (NCAS0F02230)
Spliceosome [BR:
ncs03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
NCAS_0F02230 (NCAS0F02230)
Complex B
NCAS_0F02230 (NCAS0F02230)
Complex C
U2 SnRNP specific factors
NCAS_0F02230 (NCAS0F02230)
Chromosome and associated proteins [BR:
ncs03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
NCAS_0F02230 (NCAS0F02230)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT
HEAT_2
HEAT_EF3_N
GNC1_N
XMAP215_CLASP_TOG
mTOR_dom
Adaptin_N
Vac14_Fab1_bd
Htt_N-HEAT_1
UTP20
HEAT_Maestro
Motif
Other DBs
NCBI-GeneID:
96904355
NCBI-ProteinID:
XP_003677062
UniProt:
G0VGT6
LinkDB
All DBs
Position
6:complement(444624..447479)
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AA seq
951 aa
AA seq
DB search
MSRNSGGTYSISSQLRDSLLQEAQQDEDEHKNILDKRMESRIVRKNQTDRANNLKEKRLP
LSDSADVNSQPPTKKRKSRWDVQAYQIPEQTRDTQKLINENLITTSDITGVKDLKFFKES
DKEHFAQTLKNEAKEDLTKEEQAERSLLILLLKIKNGNTASRKLAMKHLTDKALEFGPKL
IFDHVLPILLDRTLEDQERHLMIKVVDRVLYKLGPKVKAYTHQILEVVSPLLIDEDPVSR
TIGRDVITNITSTCGLGNMITSIRPDIDHEDEYVRNLAARTMAIVGKALGVPSLLPFIKA
VCHSTKSWRARHTGVKIIQQLAILLGIGILPHLTGMVECIRDGLTDEHIPVRIMTANTIA
TLAVNSYPYGIEAFNYILEPLWKGIRTHRGKVLAVFLKALGSIIPLMDPEYAAYYTEEVM
RIVKREFNSPDDEMRKTVLIVLQKCCRTEGITPKYLKTEVAPEFFRTFWTRRVALDLPMN
KLVIYTTVILSEKIGCSYVVEKLLTPLKDEAEPFRIMAIYAVNRVVKLLGTAELNERLET
RLIDALLIAFQDQSSENPIVYKTFGTVATSLDTRMQPFLSAIISTILNHLKHKDQLIRQN
AADLCSFLMPVIKNCNEMGMLNKLSIILYESLGEVYPDVLGSIIGAMFSVISISSLPDLQ
PPVNQILPTLTPILRNNHRKVQLNTIKLVGFIARRGPSYVSPKEWMRICFELLEMLKSTN
KAIRRSATDTFGFIAKAIGPQDVLVALLNNLKVQERQLRVCTSVAIGIVARTCGPYTVLP
ALMNEYKIPETNVQNGILKALTFMVEYIGDISEDYIYVLTPLLEDALTDRDLVHRQTAAD
VIKHIALHCSGTGHEDAFIHMLNLLIPNIFETSPHVIVRILDALESISQALGPGIYMSYI
WSGLFHPAKNVRKAFWKAYNNAYVQDIDALVPYYPVNNDDSIMIPELDEVL
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgagtagaaattctggtggtacttattctatatcgtcacagttgagggactcattactt
caagaagcgcaacaagatgaggatgagcataagaatatactagataagaggatggaaagc
agaatagttcgtaagaatcaaacggacagagccaataatttaaaggagaagagactacca
ttgtctgactccgctgatgtcaattcccaaccaccaactaagaaaagaaaatcgagatgg
gatgttcaggcttatcaaatcccagaacaaaccagggatactcaaaaactaatcaatgag
aatctcattaccacgtcagatatcacaggggtcaaggatttaaaattttttaaggaatca
gacaaagaacattttgcccaaaccttaaagaatgaagctaaagaagatctgacaaaggaa
gaacaagctgaaaggtcactactcatactattacttaagatcaagaacggtaatacagca
tcaagaaaactggctatgaagcatcttacagataaggcacttgaatttgggcctaaactt
atcttcgatcatgtcctaccaattctactcgatcgaacgctggaagaccaagagcgtcat
ttaatgattaaagtcgttgatcgtgtactatataaactagggcctaaagttaaagcatac
acacatcaaatattagaggtagtctcacctctactaatagatgaagatccagtttccaga
acgattgggagagacgttattacgaatattacttcaacgtgtggtcttgggaacatgatc
acatcgattagaccagatatagatcatgaagatgaatatgttagaaacttagcagctagg
acaatggctattgtgggtaaagcccttggagtaccatcattactcccattcataaaagct
gtatgccattcaacaaaatcatggagagctcgtcatacaggtgtaaaaatcatccaacaa
ttggctattttattaggtataggaattctaccacacttaacaggaatggttgaatgcata
agagacggattaactgatgaacatatacccgtccgtatcatgacggcaaatacaatcgcc
acattggctgtcaattcctatccatatggaatagaggcattcaattatattcttgaacca
ttatggaagggaattagaacacataggggtaaggtactagcagtgtttttaaaggcgcta
gggtcaattattccgttaatggatcctgaatacgctgcatattacacggaagaagttatg
agaattgttaaacgagagttcaattctcctgatgacgaaatgaggaaaactgtcctgatt
gttcttcaaaaatgttgtcgtactgaaggtattacaccaaaatatttaaaaactgaagta
gcacccgaattttttaggacgttttggaccagacgtgttgcattagatcttcctatgaat
aagctggtaatctatacgacggttattctatccgaaaagattggctgctcctacgtggta
gaaaaattgctaactccactgaaggatgaggcagaaccctttagaataatggcaatttat
gcagtaaatagggtagtgaagcttcttggaactgctgaacttaatgaaagattggaaaca
agactaattgatgctttattaatagcatttcaggatcaatcatctgagaatccgattgtt
tacaaaacgtttggaactgttgcaacctctttagatacaaggatgcaaccgttcctctca
gctataataagtaccattttaaatcatttaaagcacaaggaccaactaatacgtcaaaat
gccgctgatttatgttcttttttaatgcctgtgatcaagaattgtaatgaaatgggaatg
ctaaataaattgagtattattctttatgaatcattgggagaggtttatcccgatgttctt
ggttctatcattggtgcaatgttcagtgttatatccatttccagtctccccgatttacaa
ccgccagttaatcagattcttcctacattgacgcctattttgagaaataatcacaggaag
gttcaacttaatactataaaacttgtaggttttattgcaagacgcggtccaagttatgta
tctccaaaagagtggatgagaatatgttttgaattgcttgaaatgttaaagagtactaac
aaagctataagaagatcggcaaccgatacatttggattcattgcgaaagcaatcggtcct
caagacgttctagtagccctattaaataatttaaaggttcaagaacgtcaattacgtgta
tgcacatcagttgctattggtattgtggctagaacatgtggcccgtatactgtgttacca
gctttaatgaacgaatataagattccggaaactaacgtacaaaatggtatcttgaaagct
ctaacattcatggttgaatacattggagatatttcggaggactacatttatgtacttact
cccctgctggaagacgcactaactgacagagatcttgtacaccgtcaaacggcagcagat
gtaattaaacacattgcattacattgtagtgggacaggtcatgaggatgctttcatccac
atgttgaatttgctgataccgaatatttttgaaacatctccccacgtcattgttaggata
ttagatgctcttgaatcgatttctcaagcacttggccctggtatctacatgagctacatc
tggagcggtttattccatcccgcaaagaatgttaggaaagctttctggaaggcatataat
aatgcttacgttcaagatattgatgcacttgtcccatattatccagtcaacaatgatgat
tcaatcatgatcccggaattagatgaagtcctctaa
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