Naumovozyma castellii: NCAS_0G00590
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Entry
NCAS_0G00590 CDS
T02233
Symbol
NCAS0G00590
Name
(RefSeq) ssRNA exonuclease RAT1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ncs
Naumovozyma castellii
Pathway
ncs03008
Ribosome biogenesis in eukaryotes
ncs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncs00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
NCAS_0G00590 (NCAS0G00590)
09123 Folding, sorting and degradation
03018 RNA degradation
NCAS_0G00590 (NCAS0G00590)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncs03021
]
NCAS_0G00590 (NCAS0G00590)
03019 Messenger RNA biogenesis [BR:
ncs03019
]
NCAS_0G00590 (NCAS0G00590)
03009 Ribosome biogenesis [BR:
ncs03009
]
NCAS_0G00590 (NCAS0G00590)
03016 Transfer RNA biogenesis [BR:
ncs03016
]
NCAS_0G00590 (NCAS0G00590)
Transcription machinery [BR:
ncs03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
NCAS_0G00590 (NCAS0G00590)
Messenger RNA biogenesis [BR:
ncs03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
NCAS_0G00590 (NCAS0G00590)
Ribosome biogenesis [BR:
ncs03009
]
Eukaryotic type
Pre-60S particles
RNases
NCAS_0G00590 (NCAS0G00590)
Transfer RNA biogenesis [BR:
ncs03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
NCAS_0G00590 (NCAS0G00590)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
96904612
NCBI-ProteinID:
XP_003677299
UniProt:
G0VHR2
LinkDB
All DBs
Position
7:100713..103751
Genome browser
AA seq
1012 aa
AA seq
DB search
MGVPSFFRWLSRKYPKIISPVLEETPQVIDGVTLPLDYSAPNPNGELDNLYLDMNGIVHP
CSHPENRPPPETEDEMLLAVFEYTNRVLNMARPRKVLVMAVDGVAPRAKMNQQRARRFRS
ARDAAIENEAREEILRQKEEIGEVIDEAVKNKKTWDSNAITPGTPFMDKLAASLRYWTAF
KLATDPGWKNLQIIISDATVPGEGEHKIMNFIRSQRADPEYNPNTTHCIYGLDADLIFLG
LATHEPHFRILREDVFAQNNNKRRNFDDTLNMSEEEKQLLLAKDSEKPFLWLHINVLREY
LGAELFIPRLSFPFDLERAIDDWVFMCFFCGNDFLPHLPSLDVRENSIDILLDIWKIVLP
NLKTYMTCDGELNLESVEMLLQQLGSREGDIFKSRHIQEVRKQEAYQRKKLQKNGKFSNG
QDRHPTTPNEQLQMYDTNGELAKGSWNLTTHDMVRLKKQLMLANEGDVDAIAVIKAESEK
NDKLMKEITEEQMDKVVQEANKSNFTAAEIMKKKLQARKHQLEEEEKAEAEKDVVTKKPL
TEEKHLSEELTNEIENDVEDEDAEESKTTSENESVPAVSLGPVKSGVIDTDEAVKLYEPG
FRERYYKAKCYVSDAEIEPLRKGMVRSYVEGVSWVLLYYYQGCASWDWYYPYHYAPFASD
FFDITNIKVEFELGKPFLPYEQLMSVLPAASGHTLPAIFRPLMSEPDSPIIDFYPTEFPI
DMNGKKMSWQGISLLPFIDEKRLLETVRDQYPKLTPAERSRNVCNDPVLLISNKNANFER
FTKKFYKTENEDEVSEFTFHHFKSGLSGVVSADKEGFKLGSKIVSPVQGGGLPDLSTNLL
LKLCYKLVPLPSRNKSIILNGYIPSEQVLDAYDLDSVMYKYNNNGRNRWNFGNDMKQNKA
PVGPQGTTQYKPRVGGYRAFFFFGQQNISNMNNGYQNGGNNANQNQYHNQQNRYNSGGRG
NYQSNSRGSYQGGSRYGGNNYQQQRSGSSGSRYSGTTGNRPNNRYQGGPPRR
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccatcattttttagatggctttctagaaaatacccaaagattatatctcca
gtgctagaagagacaccacaagttatcgatggtgtcactttaccattagattattcggca
ccaaatccaaatggtgaattggataacttatacctggacatgaacggtattgttcatcca
tgttctcatcctgaaaatagaccaccaccggagacggaagacgaaatgttattggccgtt
ttcgaatataccaatagagttcttaatatggcaagaccaaggaaagtgttagtcatggca
gtcgatggtgtggctcctcgtgctaaaatgaatcaacaacgtgctcgtagatttagaagt
gctagggatgcagctatcgaaaatgaagctcgtgaggaaatattacgtcaaaaagaggaa
atcggtgaagtcattgatgaagctgtgaaaaataaaaagacttgggattccaatgcaatt
actccagggaccccctttatggataaattggctgcatcgttaagatactggacagcattc
aaattggccacggacccaggttggaaaaatttacaaatcattattagtgatgccacggtc
ccaggtgaaggtgaacataaaattatgaatttcattagatcgcaaagagctgatcctgaa
tataaccctaacactacacattgtatttatgggttggatgcagatttgattttcttgggg
ttagcaacacacgaacctcattttagaatcttaagagaagatgtatttgctcaaaataat
aataagagacgtaattttgatgatactttgaatatgtcagaagaagagaaacaactactt
ttggctaaggattcggagaagccatttctttggttacatattaatgtgcttagggaatat
ttgggtgctgaattatttattccgagactttcgttcccatttgaccttgagagagctatc
gatgattgggtttttatgtgtttcttttgtggtaatgatttcttacctcatctacccagt
ctcgatgttagagaaaatagtattgatattcttttagatatttggaaaattgtcttgcca
aatttgaaaacatatatgacatgtgatggggaattgaatttggaatctgtagaaatgctt
ctgcaacaacttggttctcgtgaaggtgatatctttaaatcaagacacattcaagaagtt
aggaaacaagaagcttatcaaagaaaaaaactacaaaaaaatggcaagttttctaatggt
caagacagacatcctaccacgccgaatgaacaactacaaatgtatgatactaatggtgaa
ttagcaaagggttcatggaatttgactacccacgacatggtgagattaaagaaacagttg
atgctcgctaatgagggtgacgtagatgccattgctgttatcaaagctgaaagtgaaaag
aatgataaactaatgaaagaaataactgaagaacaaatggataaggttgtacaggaagcc
aataaatctaattttactgctgccgaaataatgaagaaaaaattacaggctagaaagcat
caattggaagaagaagaaaaagctgaagctgaaaaggatgtggtaaccaaaaaaccactt
actgaagagaaacatttgagtgaagagcttacaaatgaaattgaaaatgacgttgaagat
gaagatgccgaagaaagcaagactacatcagaaaatgaatcagtacctgccgtgtctctt
ggaccagtgaagagtggtgtgatagacactgatgaagctgtgaaactatatgaacctgga
tttagagaaaggtattacaaagccaaatgttacgtttctgatgctgaaattgaaccatta
aggaagggaatggtgagatcatatgtagaaggtgtctcttgggtcttactttactattat
caaggctgtgcctcttgggattggtattatccataccattacgcaccatttgcatcagat
ttctttgatattactaacattaaagtggaatttgagctgggtaaaccatttttaccatat
gagcaattaatgagtgtgttaccagccgcatcaggacatacgcttccagccattttcagg
ccattaatgagtgagccagattctccaatcattgatttctatccaacggaattccccatt
gatatgaatggtaagaaaatgtcctggcaaggtattagtttattaccatttattgacgaa
aagagactgctcgagactgtacgtgatcaatatcctaaactaaccccagcagaaagatca
agaaatgtttgtaatgatcctgtactgttaatcagtaataagaatgccaattttgaaaga
ttcactaagaagttctacaagacagaaaatgaagatgaagtttctgaatttacattccat
catttcaagagtggattaagcggggtagtaagtgcagacaaggaggggtttaaattagga
tctaagattgtgtcgcctgttcaaggaggtggtctcccggatttatctactaatttactg
ttgaaattatgttataaattggttcccttaccatcaagaaacaaatcgattattcttaac
ggatatatcccatcggaacaagttctagatgcctacgatttggattctgtgatgtacaag
tacaacaataatggacgtaaccgttggaattttggtaatgacatgaagcaaaataaggca
cctgtgggaccacaaggaacgacacaatataagccgagagtaggtggatatagagccttt
ttctttttcggtcaacaaaacatttccaacatgaacaatggttaccagaatggtggtaat
aatgccaaccagaaccagtatcataaccaacaaaatagatataatagcggaggaagaggc
aattaccaatctaatagcagaggaagctatcaaggaggaagtagatatggaggcaataac
tatcagcagcagcgctcaggatcttctggaagtagatacagtggtactactgggaaccgt
ccaaataacagataccaagggggaccaccacgtcgttaa
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