Naumovozyma castellii: NCAS_0G03340
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Entry
NCAS_0G03340 CDS
T02233
Symbol
NCAS0G03340
Name
(RefSeq) U2 snRNP complex subunit RSE1
KO
K12830
splicing factor 3B subunit 3
Organism
ncs
Naumovozyma castellii
Pathway
ncs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
NCAS_0G03340 (NCAS0G03340)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncs03021
]
NCAS_0G03340 (NCAS0G03340)
03041 Spliceosome [BR:
ncs03041
]
NCAS_0G03340 (NCAS0G03340)
03036 Chromosome and associated proteins [BR:
ncs03036
]
NCAS_0G03340 (NCAS0G03340)
Transcription machinery [BR:
ncs03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
NCAS_0G03340 (NCAS0G03340)
Spliceosome [BR:
ncs03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
NCAS_0G03340 (NCAS0G03340)
Complex B
NCAS_0G03340 (NCAS0G03340)
Complex C
U2 SnRNP specific factors
NCAS_0G03340 (NCAS0G03340)
Chromosome and associated proteins [BR:
ncs03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
NCAS_0G03340 (NCAS0G03340)
TFTC complex
NCAS_0G03340 (NCAS0G03340)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
Beta-prop_HPS5
CUB_CDCP1_1
Motif
Other DBs
NCBI-GeneID:
96904886
NCBI-ProteinID:
XP_003677573
UniProt:
G0VII6
LinkDB
All DBs
Position
7:612997..616839
Genome browser
AA seq
1280 aa
AA seq
DB search
MLLQNSDLYLYHLTLQTQSNYVHSAPGNFVDIAGTGKKPSSLQLCLATETHIEIYDVSKG
TLRKLFQSPIFQFKITQLKAFTPKGSRISFIALTSDAGNLTILKCSYHQHSRIKLVPVIN
EPFARSGIRKNSPISFMTIDSMARCLTISAVQQKKLLYLLDYSERDDTLSISSPLEVVNS
NSFTLSMVDCPSNLNNNPIFTSIEIENQNYFLIFYLLDLGLNHIIKKAFFKISDPSVCFL
FALPNILQHDQDPINPCVLLGFNKYLLVKDMNGSINIKIDMPSIDTNEDVFIISATMQKL
KKNEYFILLQSNRGHLYKLTHKFDADDNNSLHFSMTFFDAILPSSSMHIFKNGFMFTNSE
YNDNKNYLFQFQSLGEEGEKQEYKPDILQNLSIASTQQKNNPLLSSSVNNSTPLQLITSN
SKENTITVLSNATRFNNLISTNLPPNVRNIWTIKAKHSLMFLSFINSTMILQITNDSMEQ
LTLPYKSPFIEKDEMTIYVNKMGSNSIVQICTNTLRQIHIDTNQTFTEKLNWFPPAGIHI
TNAQCNDTQLILSLSNNEIVYFQMDQSDSLMEYQRRLEFNDDEPITSISLIESSSSTTFS
NIMAIGTKGSLIKIVSLNSNDPDTFLEVVSLQTTLSAVNQLKLVSNNKTIKLHVGLDNGV
YMNSNVNVKDGTIFDVRTKYLGPNPITLSHLPSVSILERHTSNDDEDESEDEDEKEQLAV
KQNCIVIHGLNTWISYNHESLSYIRPLSMPHGTKYLKSVAPFVTENVPLNGCVGLGSNGG
LIIGKLDDFPLYHDWFHSDEVADAESEEEEDEEEDEDEDEDQILKKASYRNKKILPFTHD
NRTSYKLIIDNSLTDSKCKVRLVDMDTGEIGTYFGLTTPNSDSFDFKCKAAAITKFGKLN
DNYLVIATESNKLCTFQFFIKRKPRQFTLELLHTTDVEGNVNCMIPFKDLLLVPYDDNFL
VLYDLGKKQLLKRSISKTLPSMTRIVQMANWQDERIAVGDIHQSVTLLHFDQRTNSFIPL
ADDITQRHVTSLAFLDKSTVIGGDRFGNVWTLRLADENEDVLNKLIAELAADQDSNVTLL
KSLLRHDSNLRNKLPNIFECPFKLTLMNHFFINDIVMNFHIIESLQMSDRPTILYTGLQG
SIGCLVPLLAKSQITMLKKIEKAVSEADDILILNRYMKKTDGNDSDLSDADTADAIDFTN
THHGKKEDTRPEGYYSIVGRDHSKYRGYYAPVRNTVDGDLCESFLNFTSSEQTLLCRSIG
KKVHTEDIQRYINEIRTNYI
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgcagaactcggacctatatctctaccatcttaccctgcagacacagtccaac
tacgtccactctgccccggggaacttcgtcgacatcgctggtacaggcaagaagccatcg
tccctgcagctgtgtctcgccacggagacacatatagagatatacgacgtatcaaagggt
acattgcgtaaattgttccaatcgccaattttccaattcaagataacgcaattgaaggct
tttacaccgaagggttcgcgtatttcatttatagctttaacatcagatgccggtaatcta
actatactgaagtgttcgtatcatcagcattccaggataaaattggtacctgtgatcaat
gaaccctttgcaagatccggtatcaggaaaaattcgcccatttcgttcatgacaatagat
tccatggctcgatgtttaaccatatccgctgtacagcagaaaaaattgctctatctactg
gattactcagaaagagatgacacgctatccatatcttctcccttggaagtggtaaattca
aactcattcactttatccatggttgattgtccctcaaatttaaataataacccaattttc
acatccattgaaattgaaaatcaaaattattttctcattttttatctattggatctaggt
ttgaatcatataattaagaaggccttctttaagatatcagacccatcagtatgtttcctc
tttgctttaccgaacatactgcaacatgatcaagatccaattaacccatgcgtattacta
ggtttcaacaaatatcttctcgtcaaggatatgaatggatccataaatataaaaattgac
atgccatctattgatactaatgaagatgtctttataatatcagctaccatgcaaaaattg
aaaaaaaatgaatattttatactattacaatccaatagaggtcatttgtataaattaaca
cacaaatttgatgctgatgataacaattctttacactttagcatgacattttttgacgct
atattaccttcatcatcaatgcatatctttaaaaatggattcatgtttaccaactctgag
tataatgataataagaattaccttttccaatttcaatcattaggtgaagaaggcgaaaag
caagagtataaacctgacattttgcagaatttatccatcgcatctacccaacagaaaaat
aaccccttattatcatcatccgtcaataattccacaccattacaattaataacatcaaac
tcaaaagaaaatacaataaccgtgttatccaatgcaacaagattcaataatttaatatct
acaaatctaccaccaaatgtaagaaatatctggaccatcaaagccaaacactcgttaatg
tttttatctttcattaattccaccatgattttacaaataacaaacgattccatggaacaa
ttaaccctaccttacaaatctccattcattgaaaaggatgaaatgaccatatacgtcaat
aaaatggggtccaattccattgttcaaatatgtacaaacacactgagacaaattcacatc
gacacaaatcaaacttttacggaaaaattgaattggttcccaccagcaggtatacacata
acgaatgctcaatgtaatgacacgcaattaatcctatcattatccaataatgaaatcgtc
tatttccaaatggatcaaagcgattcactaatggaataccaaagaagattggaatttaac
gacgatgagcccatcacgtcaatttcattaatcgagtcctcgtcctcgacaacatttagc
aacattatggccattggtacaaagggatccctaataaagatagtatcattaaattccaac
gatccagatacgtttctggaagtggtttcgcttcaaacaacgttatcagcagtgaatcaa
ctgaaattggtatccaataataaaaccattaaattacatgtcgggttagataacggtgtt
tacatgaactccaatgttaacgtcaaagatgggaccatatttgacgtgagaaccaaatat
ttaggtccaaatccaattactctatctcacctaccatccgtctccatcttagagaggcac
acatccaatgatgatgaagacgaaagtgaagacgaagatgagaaggaacaattagcggtt
aagcaaaactgtatcgtcatacatggcttaaatacatggataagttacaaccatgaatca
ttatcgtatattagacctctatcaatgcctcatggtactaaatatttgaaatctgtggcc
ccctttgtcacagagaatgtaccacttaatggttgtgtggggttaggctccaatggaggt
ctgatcattgggaagctggacgatttcccactgtatcacgactggttccattctgatgaa
gtagcagatgctgaaagtgaagaggaagaggatgaagaggaggacgaagatgaggatgag
gatcagattcttaaaaaggcatcctacagaaataaaaaaatcttaccatttactcatgac
aatagaacaagctataaacttataattgataattccctcacagattccaaatgcaaagtc
aggttagtagacatggatactggtgaaattggtacgtatttcggtttgactactcccaac
agtgacagttttgattttaaatgcaaggctgccgccattactaaatttggcaaattaaat
gataattacttagttatcgccacagaaagtaataaattatgtacttttcaatttttcatc
aaaaggaaaccgagacagtttactctggaacttttacatacaacagatgtagaaggtaac
gtgaattgtatgattcccttcaaggacttattattagtaccctatgacgacaatttccta
gtactatacgacttgggtaagaaacaacttttgaaaaggtccatttccaagacacttcca
tccatgacccgtattgttcaaatggcaaattggcaagatgagagaatagctgttggggac
attcatcaatctgtcacgttattgcactttgatcaacgaacaaattctttcatacctctg
gcagatgatataacacagagacacgtaacaagcttggcatttttagataaatcaacagta
atcggtggtgatcgtttcgggaacgtttggacattaagattagcagatgaaaatgaagat
gtattgaacaaattgatcgctgaacttgcagctgaccaggattcgaatgtcacgctattg
aaatcgttgttaagacatgattcaaatttaagaaataaactgccaaatatatttgaatgt
ccatttaaattaacattaatgaatcatttcttcataaatgatatcgttatgaatttccat
ataattgaatcactacaaatgtcggatagacccacaatcttatacacaggattgcaaggt
tctattggttgcttggtacccttattggctaaatcacaaataacaatgttgaaaaaaatt
gaaaaggctgttagtgaagctgacgatatcttaatattgaatcgatacatgaagaagaca
gatggaaacgattcagatttaagcgatgctgatactgctgacgctatagactttacgaat
actcatcacggaaagaaggaagacacaagacctgaagggtactattctattgttggaaga
gatcattctaaatatagaggctattatgcgcctgtgagaaatacagttgatggcgatttg
tgtgaatcattcctaaattttacttcttcagaacagactttgttatgtaggagtattggc
aagaaagtccatactgaggacattcaaagatatattaatgaaatcagaactaattatata
tag
DBGET
integrated database retrieval system
