Naumovozyma castellii: NCAS_0H00860
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Entry
NCAS_0H00860 CDS
T02233
Symbol
NCAS0H00860
Name
(RefSeq) exosome nuclease subunit RRP6
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ncs
Naumovozyma castellii
Pathway
ncs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCAS_0H00860 (NCAS0H00860)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncs03019
]
NCAS_0H00860 (NCAS0H00860)
Messenger RNA biogenesis [BR:
ncs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
NCAS_0H00860 (NCAS0H00860)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
MC2
Motif
Other DBs
NCBI-GeneID:
96905075
NCBI-ProteinID:
XP_003677745
UniProt:
G0VIR9
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Position
8:complement(156180..158447)
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AA seq
755 aa
AA seq
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MSEQSQEQEKTLLPKVVNTVRAASALAAQDVDFYRSIDKDIAHSLEQSSNQIADMINSVL
LSIDENSEQVDGTKENLEDIWKDFGNLMDNLFEKSDRSIDIITRGHGGSNGQSGMQYIDE
FSGRDLTPGKQILKPQLKFTTPIDNTESHPFIPLLKEKPFALKPLEESMQMIPEDETSPM
HYPQPYEYEIDHQEYNDLILQKKDPIPSTSWTDNEPIWVDTVSQLQSIMPDLEASTEIAV
DLEHHDYRTYYGITCLMQISTRKNDYLIDTLALREDLQILNNVFANPMITKVFHGAFMDI
IWLQRDLGLYVVGLFDTFHASRAMGLPKHSLAYLLEKFAQFKTSKKYQLADWRIRPLSKA
MHAYARADTHFLLNIFDQMRNSLIEQNKLAGVLKESRNVAKRRFEYSSFRPKVLQTNGLV
YSPIEKDDPWKTIMFQYNIPPQKEPLLKELYQWRDKIARRDDESPRFVMPNQLLVSLVAY
TPIDAPGVVSVSNSVTDYVRSNSKILANLIKNCLAKMKDNKFLDNNVAEEGISVVPETGH
DLSQKLTIHQLQNLKSKFQLLSDKFNNSVKTRLSNHDQLYLFDGISFADDVTIKYFADGK
IQTTAEQYKERSEQFDDAMKQLEEVEYCIPVIEENKQTQDQDNIPPITVATNAEGQVNEM
IEKPEDLDEVIVLRKTNKNKSIKNKPKNREEPELEIIDYFKTAKVLTNDKNSRGGRNNNG
NKRKRFDPYSAANEGPAAPKKRKNVTRGKNVSFKR
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagcagtcacaagaacaggaaaagactttacttcctaaggtggtaaacacagtt
agagctgcgtcggcgctggccgctcaagatgtcgatttttacaggagtatagataaggat
attgctcattcattagaacagtcctctaaccaaatagctgacatgattaacagtgttctg
ttatccattgatgaaaattcagagcaagtggatggaacaaaggagaacttagaagatata
tggaaggattttggtaatttgatggataatctatttgaaaaatcagataggtctatagat
attataactcgtggacacggtggtagtaatgggcaatccggtatgcaatatattgatgag
ttctcgggcagagatttgacacctgggaaacaaatattgaagccacaattgaaatttact
actcctattgataatacagaatcacatcctttcatcccactattgaaagaaaaacccttt
gcactaaagcccctggaggagtctatgcaaatgattcctgaagatgaaacgtctccaatg
cattacccacaaccgtacgaatatgagattgatcaccaagaatataatgatttaatatta
cagaagaaggacccaataccctctacctcgtggacagataatgaaccaatttgggtggac
acagtatctcaactacaatctataatgcccgatttggaagcctctacggaaattgccgtg
gatttggagcatcacgactatagaacatattacggtattacgtgtctcatgcaaataagt
acgaggaagaatgattatttgatagatacattagcattacgtgaggatttacaaatattg
aataacgttttcgctaatcccatgattacaaaggtattccatggtgcattcatggatata
atttggttacaaagagatttaggtctttatgtggtgggattatttgatacctttcacgca
tcaagagccatgggcttgcccaaacatagtttagcatatttattagaaaagtttgctcaa
ttcaagacttccaagaaataccaactagcagattggagaattagaccactctcgaaggca
atgcacgcgtacgcaagagcagatacgcatttcttattaaacatttttgatcaaatgaga
aattctctaattgaacaaaataagttagccggcgtgttaaaagaatccagaaatgttgcc
aagagaagatttgaatattccagctttagacctaaagtgctacaaacgaatgggttagtt
tattctcctattgaaaaggatgatccatggaaaactatcatgttccaatataatattccc
ccacagaaggagcctcttttgaaagagttgtaccaatggagagataagattgctagaaga
gatgatgaatcgccaagattcgtaatgcccaatcagttattagtatcattggtagcgtac
actccgattgatgcacctggtgttgtttcagtgagcaattcagtcacagattatgttaga
tccaattcaaagatattagcaaaccttatcaaaaattgtcttgccaagatgaaggacaac
aaatttttggataacaatgttgcggaagagggaatttcagtagtaccagaaacaggtcat
gatctttcacaaaagttaacgatacaccaattacagaacttgaaatccaaattccagttg
ttaagtgataagtttaataactctgtgaagacaagattatcaaaccatgatcagttatat
ctattcgatggtatttcctttgctgatgatgtaacaattaaatattttgcagatggtaag
attcagacaactgcggagcaatataaggaacgttctgaacaatttgatgacgccatgaaa
caattagaggaagttgaatattgtatacctgttattgaagaaaacaagcaaacccaggat
caagataacattccaccgatcaccgtggccactaatgctgaaggtcaagtcaatgaaatg
atagagaaaccagaggatttggacgaagtcattgtgctcagaaagacgaataagaacaag
agtataaagaacaagccaaagaacagagaagaaccggaattggagattattgattatttc
aagactgctaaagttcttacaaatgataaaaattcaagaggaggacgtaataataatggc
aacaagaggaaaagatttgatccttattctgctgcaaatgaaggtcccgctgctccaaag
aagagaaagaatgtgactagagggaagaacgtctcatttaagaggtaa
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