Naumovozyma castellii: NCAS_0H02400
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Entry
NCAS_0H02400 CDS
T02233
Symbol
NCAS0H02400
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ncs
Naumovozyma castellii
Pathway
ncs03020
RNA polymerase
ncs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ncs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCAS_0H02400 (NCAS0H02400)
09124 Replication and repair
03420 Nucleotide excision repair
NCAS_0H02400 (NCAS0H02400)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncs03021
]
NCAS_0H02400 (NCAS0H02400)
03400 DNA repair and recombination proteins [BR:
ncs03400
]
NCAS_0H02400 (NCAS0H02400)
Enzymes [BR:
ncs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCAS_0H02400 (NCAS0H02400)
Transcription machinery [BR:
ncs03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
NCAS_0H02400 (NCAS0H02400)
DNA repair and recombination proteins [BR:
ncs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
NCAS_0H02400 (NCAS0H02400)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
96905227
NCBI-ProteinID:
XP_003677897
UniProt:
G0VJ71
LinkDB
All DBs
Position
8:complement(471228..474902)
Genome browser
AA seq
1224 aa
AA seq
DB search
MSAPGEEEYYDEDDVYGFEDENAPITAEDAWAVISSFFREKGLVSQQLDSFNQFVDYTLQ
DIISEDSTLILEQLAQHTTETDNVSRKYEIGFGKIYVTKPMVNESDGVTHALYPQEARLR
NLTYSSGLFVDVKKRTYEAVDVPGRELKYELIAEESEEESESGKVFIGRLPIMLRSKNCY
LSDATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEI
RSALEKGSRFISTLQVKLYGREGSDARTINATLPYIKQDIPIVIIFRALGIIPDGEILEH
ICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEF
LPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLASLFKTL
FRKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVS
QVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS
LMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMDTL
RTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDETLGHKELKVRKGHIAK
LMATEYQDIEGGFEDAEEYTWTSLLNEGLVEYIDAEEEETILISMQPEDLEPPMENEEVI
DDMDPAKRIRATQHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGV
FLTNYNVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMI
MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIA
PGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDG
LKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSR
MTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKK
LMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIA
HGAAAFLKERLMEASDAFRVHICGNCGLMSVIAKLNHNQFECKGCDNKIDIYQIHIPYAA
KLLFQELMAMNITPRLYTERSRDF
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctcctggagaagaagaatattatgatgaagacgatgtttacggatttgaagat
gaaaacgctcctatcacagcggaagacgcctgggcagttatttcttcatttttccgtgaa
aaaggtttagtatcccaacaattggactctttcaatcaattcgtcgattatactttgcag
gatatcatttctgaagattccactttgattctagaacaattagcacaacataccactgaa
actgataatgttagtaggaaatatgaaatcggtttcgggaaaatttatgttaccaaaccg
atggttaatgaatctgatggtgttactcatgccttatatccacaagaagcacgtttacgt
aatttgacctattcttctggtttattcgttgatgtgaaaaagagaacttacgaagctgtc
gatgttccaggaagagagttgaaatatgaattaattgcagaggaatctgaagaggaaagt
gaaagtgggaaagtcttcatcggtcgtttgcctatcatgttaagatcaaagaattgttac
ttaagtgatgccacggagtcagatttatataaactaaaagaatgtcctttcgatatgggt
gggtatttcattattaatggttctgaaaaagttttaatcgctcaagaacgttcagcaggt
aatatcgtacaagtctttaagaaagcagccccatccccaatttcacatgtcgcagaaatt
agatcagcattggaaaagggttccagatttattagtacattacaagttaaattatatggt
cgtgagggaagtgacgctcgtacaatcaatgcaactttaccatacattaaacaagatatt
ccaatcgttattatctttagagcacttggtattatccctgatggtgaaatcttagaacat
atttgttacgatgttaatgactggcaaatgttagaaatgttgaaaccttgtgtggaagat
ggttttgtcatccaagatcgtgaaactgccttagattttattggtcgtcgtggtactgca
ttaggtatcaagaaggaaaagagaattcaatacgcaaaggacattttacaaaaggaattt
ttacctcatattactcagttagaagggtttgaaagtagaaaggcatttttccttggttat
atgattaatagactattgttgtgtgctttggaccgtaaagatcaagatgatcgtgatcat
ttcggtaagaaaagattagatttggctggtccattattagcatctcttttcaagactcta
ttcagaaaattaacaaaagatattttccgttacatgcaaaggactgtggaagaagctcat
gatttcaatatgaaattggctattaatgccaagacaattacatcaggtcttaaatatgcc
ttagccactggtaattggggtgaacagaaaaaggccatgtcatcaagagcaggtgtttca
caagtgttgaatcgttatacttattcctctaccttatcacatttgagaagaactaatacg
ccgattggtcgtgatggtaaattagccaaacctcgtcaactacataatacacattggggg
ctggtctgtcctgcagaaacacctgaaggtcaagcgtgtgggttagtcaagaatttatcg
ttaatgtcatgtatatctgttggtaccgatccaatgccaattattactttcttaagtgaa
tggggtatggaaccattagaagattacgttcctcatcaatctccagatgctaccagagtg
ttcgttaatggtgtctggcatggtgttcatagaaatccagctagattaatggacactttg
agaacgttgagaagaaagggtgatattaatccggaagtctcaatgattagagatattcgt
gaaaaggagttgaaaatctttacagatgcaggtagagtgtatagaccattgttcattgtt
gaagatgatgaaactcttggtcataaagaattgaaggtaagaaagggtcatattgccaag
ttaatggctactgaataccaagatatcgaaggtgggtttgaagatgccgaagaatataca
tggacttcattgttgaacgaaggtcttgtggaatatatcgatgcagaggaagaagaaacg
attttaatttcaatgcaaccagaagatttggaaccaccaatggaaaatgaagaagttata
gatgatatggaccctgccaaacgtattagagccacacaacatgctacaacatttacacat
tgtgaaattcatccttctatgattcttggggttgccgcatcaatcattccattccctgat
cataatcaatccccacgtaatacatatcaatctgcgatgggtaaacaagccatgggtgtt
ttccttacgaattataatgttcgtatggatacaatggcaaacattctatattatccacaa
aaacctttaggtacaacacgttcaatggaatatttgaagttcagagaacttcctgctggt
caaaatgctatcgtggctattgcttgttattcaggttataaccaagaagattccatgatt
atgaatcaatcatctattgatcgtgggttgtttagatcgctatttttcagatcctacatg
gatcaagaaaagaaatacggtatgtctattactgaaacatttgaaaaaccacaacgtacc
aatacattgagaatgaaacatggtacatatgataaattagatgatgatgggttgattgca
ccaggtgttagagtttctggtgaagatataattattggtaagactacaccaatatcgccg
gatgaagaagaattagggcaaaggaccgcatatcattctaagcgtgatgcatcaacacct
ttgagaagtacagaaaatggtattgttgatcaggttctaataacaaccaatcaagatggt
ttgaaattcgttaaagtccgtgtcaggacaactaaagttccacaaattggtgataaattt
gcatctcgtcatggtcaaaagggtaccattggtattacataccgtagagaagacatgcca
tttactgcggaaggtattgttccagatttaatcattaatccacatgctatcccatctcgt
atgacagtggcgcatttaattgaatgtttgctaagtaaggttgctgctctatctggtaat
gaaggtgatgcatctccatttactgatattacagtggaaggtatttccaaattattgcgt
gaacatggttatcaatctcgtgggtttgaagttatgtataatggtcatacaggtaagaaa
ctaatggcgcaaatctttttcggtcctacttattatcaacgtttaagacatatggtcgat
gataagattcatgccagagctcgtggtccaatgcaagttttaactagacaacctgtggaa
ggtagatcaagagatggtggtttaagattcggtgaaatggaacgtgattgtatgattgct
catggtgctgctgcattcttaaaggaaagattaatggaggcatcagacgcctttagagtt
catatttgcggtaattgtggtctgatgtccgttatcgccaaattaaatcataaccaattt
gaatgtaaaggttgtgataacaagattgatatctatcaaattcatattccatatgcagcc
aaattgttattccaagaattgatggccatgaatatcactcctcgtttatacacggaacgt
tcgagagatttttaa
DBGET
integrated database retrieval system
