Naumovozyma castellii: NCAS_0J01560
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Entry
NCAS_0J01560 CDS
T02233
Symbol
NCAS0J01560
Name
(RefSeq) SKI complex RNA helicase subunit SKI2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ncs
Naumovozyma castellii
Pathway
ncs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ncs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCAS_0J01560 (NCAS0J01560)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncs03019
]
NCAS_0J01560 (NCAS0J01560)
Enzymes [BR:
ncs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NCAS_0J01560 (NCAS0J01560)
Messenger RNA biogenesis [BR:
ncs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
NCAS_0J01560 (NCAS0J01560)
mRNA degradation factors
3'-5' decay
Ski complex
NCAS_0J01560 (NCAS0J01560)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
Ski2_beta-barrel
DEAD
ResIII
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
MTR4_beta-barrel
Motif
Other DBs
NCBI-GeneID:
96905832
NCBI-ProteinID:
XP_003678473
UniProt:
G0VKU7
LinkDB
All DBs
Position
10:complement(276723..280619)
Genome browser
AA seq
1298 aa
AA seq
DB search
MSSSFSKSSIEELYQSLREITNDNDLELFEDRITKLDVENNNTTSSQVNETIKEKFLTPS
NVLSWGLLDIVQKVPQMNFLDDPTSDNKDADSYDYKQFLKIPEPISRTAYYFKRTGIEGR
ISGAKEEVSLKEIANANASNSLSITRGLNHHGNTIRGSTFQLPFTPGGIDMEAVTDSFKD
GVSSMSNATKLLHKDEQGLFDIPLGFNRGIIPKGTTSPSNSEEVDDVQQLNKIDNEVDVE
RELEDDRRRMEEETQTLLSETILNDNCTTTSKNDNLTAEIDNLLPLGIDFGRSVSKAKNL
LKKKEWAHMVDLNHKLEHFSELVPNPAREWPFELDTFQKQAVYHLEQGDSVFVAAHTSAG
KTVVAEYAIAMSKRNMTKTIYTSPIKALSNQKFRDFKETFEDVDIGLITGDVQINPEANC
LIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSA
TVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWANKQLIPVINPQREFLDANFKKH
KDLLSGKPAEKTSGDKGKDDKRGSRGGRGGQRGGSGRGGNQRGGSGRGGNQRGGSGRGGS
RGAGAIGSNKRQFFMRSGPGKKTWPELVNFLKGKDLLPMVVFVFSKKRCEEYADWLEGIN
FCNAKEKSQIHMFIENSITRLKKEDRELPQIMKIRNLLERGIAVHHGGLLPIVKELIEIL
FSKGFIKVLFATETFAMGLNLPTRTVVFSEIQKHDGSGLRDLTPGEFTQMAGRAGRRGLD
KTGTVIIMAYKEPLAATSFKEVTLGVPTKLESQFRLTYNMILNLLRIEALKVEEMIKYSF
SENTKQTLKPEHEKKIKELTEQLNTIESFNCDTCNVDIEKLLDATIRFRECTSNMMTELA
KSDVIFRVLRVGRLILFRDDNDCLKLGFVFRNNVKDANCVVMVISEPNTLAGGEPNHLPY
LGDQVSFTMSNFTKFKSVPYSMEHVLFSSIELVSQYTLRVNFTDLMKQDAEAIATFENEV
KMIINVSRKLKESTSERKGSLKAHQSALERENIKKEIVSLKSSFCPHLPEHFVPVFKKHL
INREIKDISHLMSDQNLNLLPDYERKLDVLKAAGFIDQSHNVMLKGRVACEINSGYELVL
TELILDNFLGDFEPEEIVALLSVFVYEGRTREEEAPVVTPRLAKGKARIQEIYRKMLSLY
EEHQVPLIQEEAEFLDKKRFALMNVVYEWARGLSFKEIMDISPEAEGTVVRVITRLDEIC
REVKTASIIIGNSTLHMKMGRAQELIKRDIVFAASLYL
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagctcgttcagcaaaagttcaattgaagaactctatcaaagtttacgtgaaatt
acaaatgataacgaccttgaattatttgaagatcgtatcactaaattagatgtcgaaaac
aacaataccacttcatcacaggtcaacgaaaccatcaaggagaaattcctcactccatca
aatgtactctcctgggggttactcgatatcgttcaaaaagtcccacagatgaatttcttg
gatgacccgacttcagacaataaggatgcagattcatatgattataaacaattcttgaag
attcctgaacccattagcagaactgcctattatttcaaaagaacaggaatagaaggacgt
atcagtggcgctaaggaggaagtatcgctgaaggagatagcaaatgcaaatgcatcaaat
tcattatccatcacgagaggtttgaatcatcatgggaatactattagagggtccactttc
caattaccgtttactcccggtgggattgatatggaagctgtgacagattcattcaaagat
ggggtctcatcgatgagtaatgcgacaaagctattacataaggatgaacaagggttgttt
gatattcccctgggatttaatagaggtatcattcctaagggtaccacatcaccttctaat
tctgaagaagtggatgatgtgcaacaattgaataagatcgataacgaagtggatgtcgaa
agagaattggaagatgatagaaggagaatggaggaagaaacacaaactctgttatcagaa
acaatcctcaatgataactgtacaactacttctaagaatgataatttgaccgccgaaata
gataatctcctaccgttaggtattgattttgggagatctgtaagtaaggcgaagaatctt
ctcaagaagaaagaatgggcacacatggttgatttaaatcacaaattggagcatttcagt
gagctggtaccaaatccagcaagagaatggccatttgaattagacacattccaaaaacaa
gccgtttaccatttagaacaaggtgattctgtattcgttgcagcccatacctcagcaggt
aaaactgtggtggcagaatatgccattgccatgtcaaaaagaaacatgaccaaaacgatc
tatacatctccaattaaagcgttatctaatcaaaaattcagagattttaaagaaactttt
gaagatgttgacattggtttaattacaggtgatgtacaaattaatccagaggcaaactgt
ttaattatgactacagaaattctaagatcgatgttatatcgtggtgctgatttaattaga
gatgttgaatttgtcattttcgatgaagttcattatgttaatgatcaggatcgtggtgtt
gtatgggaagaagtcattattatgcttccacaacatgtaaagtttattttattatctgcc
actgtgccaaatacatatgaatttgccaactggattggaagaacaaaacagaagaatata
tatgttatttccaccccaaaaagaccagtaccattagaaattaatatttgggcaaataaa
caactaatcccagtgattaaccctcaaagagaattcctcgatgcaaatttcaaaaagcat
aaggatctgttgtcggggaaaccagctgaaaagacttcaggcgacaaaggaaaagatgat
aaaagaggtagccgaggcggaagagggggccaaagaggtgggtctggccgtggaggtaac
caaagaggtgggtctggtcgtgggggtaatcaaagaggtggatctggtcgtggtgggtct
agaggcgcaggtgccattggctctaataaacgtcaattctttatgagaagtgggcccggt
aaaaaaacctggcctgagttagtaaacttcttgaaaggaaaagatttactaccaatggtt
gtgtttgtctttagtaagaaaagatgtgaggaatatgcagactggttagaaggtattaac
ttttgtaacgccaaagaaaaatctcaaattcatatgtttattgagaattctattacacgt
ttaaagaaggaagatcgtgaacttcctcaaattatgaaaattagaaatctgcttgagagg
ggtatcgcagtgcatcatggtgggttgctaccgatcgttaaagaacttatcgaaattctt
ttctctaagggattcatcaaggtgttattcgccaccgaaacatttgccatgggtcttaat
ttgcctactagaacagtagtcttcagtgaaatccagaaacacgacgggtctggtttaaga
gacttaacacccggtgagttcacacaaatggcaggtagagccggtcgtagagggttagat
aagacgggtacagttatcatcatggcatacaaagagccattagcagcaacatcgtttaag
gaggtcacattaggtgtcccaacaaaactggagtcacaattcagattaacatataacatg
atcttgaacttattaaggattgaagcattgaaagtggaggaaatgatcaagtattcattt
agtgaaaacaccaaacaaactttgaaaccggagcatgaaaagaaaattaaggaactaact
gaacagttgaacacaattgagtcattcaactgtgatacatgtaatgttgacattgagaag
ctcttagatgccacaataaggtttagggaatgtacatcaaatatgatgactgaattggca
aaatctgacgttattttccgtgttcttagagttggaagattgatacttttcagagatgat
aacgattgtttgaaattaggttttgttttcagaaataatgttaaggatgctaattgtgtt
gttatggtgatatctgaaccaaatactctagctggaggagaaccaaaccacttaccatac
ttaggagatcaagtatccttcaccatgagtaatttcactaaattcaaaagtgttccatat
tcaatggaacatgtgctgtttagctcgattgaactggtttcacaatatacactgcgagta
aattttaccgatctgatgaagcaggatgctgaggcaatcgctacttttgagaatgaggta
aaaatgattataaacgtatcgagaaaattgaaggaaagtacatctgaaaggaagggaagt
ttgaaagctcatcaaagtgcattggaaagagaaaatatcaaaaaagagatagtttcctta
aagtcttcattctgtccacatttaccagaacacttcgtgcctgtattcaagaaacattta
attaatagagaaataaaggacatttcccacttgatgtctgaccaaaacttgaatttattg
cctgactatgagcgtaaattggatgtcttgaaagcagcaggttttattgatcaaagtcat
aatgttatgttaaagggtagagtagcgtgtgagattaactcaggttatgaattggttctt
accgagttaattttagataatttccttggtgatttcgaacctgaagaaatcgtagcatta
ttgtcggtgttcgtttacgaaggtcgtacaagagaggaagaggcacctgttgtaacacct
agactagcgaaggggaaagctagaattcaagaaatttatcgtaagatgttgtccttatat
gaagaacatcaagttccattgattcaagaagaagctgaatttttggataagaagagattt
gcattgatgaatgttgtttatgaatgggctcgtggattatccttcaaagaaattatggat
atcagtccggaagctgaaggtaccgttgtgagagttattacaagattagatgaaatctgt
cgtgaagtgaaaacagcatctattatcattgggaattcaacattgcatatgaagatgggt
agagcacaagagttgattaagagagatattgtatttgcagcaagtttatacctatag
DBGET
integrated database retrieval system
