Candidatus Nitrosomarinus catalinensis: NMSP_0297
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Entry
NMSP_0297 CDS
T04846
Symbol
rtcB
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nct
Candidatus Nitrosomarinus catalinensis
Brite
KEGG Orthology (KO) [BR:
nct00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nct03016
]
NMSP_0297 (rtcB)
Enzymes [BR:
nct01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NMSP_0297 (rtcB)
Transfer RNA biogenesis [BR:
nct03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NMSP_0297 (rtcB)
Prokaryotic type
tRNA splicing ligases
NMSP_0297 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Complex1_LYR
DUF3492
Motif
Other DBs
NCBI-ProteinID:
ARS63923
UniProt:
A0A2Z2HIJ7
LinkDB
All DBs
Position
260960..262408
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AA seq
482 aa
AA seq
DB search
MSSANPKKIGENHYQIDADSNLGMKVPVRIYANEALLQKMLSDRTIMQARNVASIPGIVS
HSVVLPDGHEGYGFPVGGVAAMDAEEGMISPGGVGYDINCGVRLLRSNLNEQTVRSKLKD
LVNDLFSSIPSGVGSKGAVRLTNSELDEVLVNGVNWAIEHGYGSSNDSDVCEENGKIPNA
DPNKVSDKARKRGAPQLGSLGSGNHFLEIQKVEEIHDEEAANRMGIKEGTITVLIHCGSR
GFGHQVCSDYLRVAEQAMEKYNINLPDRELACVPNNSEEGESYRKAMFTALNFAWSNRQM
ITHWTRKSFERVFSQTESDLDMKLVYDVAHNIAKVEKHNVNGEERKLVVHRKGATRAFPS
NRNEIPSKYRDLGQPVLVPGSMGTSSWILLGKSNSMDLSFGSTAHGAGRTMSRSKARRNF
TEDSVKKSLNDKGIFIKALTRDGVVEETPQAYKDVDSVVNVSHNLGIATKVAKLVPIGVI
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagcaaatccaaagaaaattggagaaaatcattatcaaattgatgctgattca
aatcttggaatgaaagttcctgttaggatttatgcaaatgaggcattgctccaaaaaatg
ttatctgataggactataatgcaggctcgaaacgttgcttcaattcccggaattgttagt
catagtgttgttttacctgatggacacgagggatatggatttccggtaggtggagttgca
gctatggatgctgaagaaggcatgatcagtccaggtggtgtaggatatgatattaattgt
ggggtaagattactccgttcaaatttaaatgaacaaactgttcgttcaaaattaaaagat
ttagttaatgatttgtttagttctattccttctggtgttggttcaaaaggtgcagtccgt
ttaacaaattcagaattagatgaagttttagttaatggtgtaaactgggctattgaacac
ggatatggttcatcaaatgactctgatgtttgtgaagaaaatggcaaaattccaaatgca
gatccaaacaaagtttctgataaggcaagaaaacggggagctcctcaacttggaagtctt
ggttctggaaatcactttcttgaaattcaaaaagttgaagaaatacatgatgaagaagct
gcaaatagaatgggcattaaagaaggaacaatcactgttttaattcactgtggttctaga
ggatttggccatcaagtatgtagtgattaccttcgtgttgctgaacaagctatggaaaaa
tataacatcaatttgcctgacagagaacttgcttgtgttccaaataattctgaagaaggt
gaatcgtatagaaaagcaatgtttactgcattaaattttgcatggagtaatagacaaatg
attactcattggactagaaaatcatttgaacgtgtattttctcaaacagaatctgatttg
gatatgaaattagtttatgatgtagcacacaatattgcaaaagttgaaaaacataatgtt
aatggtgaagaaagaaaattagttgttcatagaaaaggtgcaacacgtgctttcccttct
aatcgtaatgaaatcccttccaaatatcgcgatttaggtcaacctgttttggtacctggt
tccatgggcacctcgagctggattttattgggtaaatccaattccatggatctcagtttt
ggttctactgctcatggcgcaggaagaacaatgtctagatcaaaggctcgacgtaatttt
actgaagatagtgtaaagaaatctcttaatgataaagggatatttatcaaagcacttact
cgtgatggagttgtggaagaaactcctcaagcttacaaagatgttgattctgtagttaat
gtatcgcataatttgggaattgcaactaaagttgcaaaattagtgcctataggagtgata
aaaggatga
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